Sylvia atricapilla (blackcap): 136358620
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Entry
136358620 CDS
T10263
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
136358620 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sati04121
]
136358620 (TRIM54)
Ubiquitin system [BR:
sati04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
136358620 (TRIM54)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
TRIM_CC
DUF8512
Sina_RING
RHH_9
WHD_3
CYP38_PsbQ-like
Prok-RING_4
Zn_ribbon_FGT1_2
ZorA-like_t1
DUF5799
CoiA_N
Motif
Other DBs
NCBI-GeneID:
136358620
NCBI-ProteinID:
XP_066170608
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All DBs
Position
3:273782..277696
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AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEENGRRQKQHLGLRFDALYGILEERKKELLQSIAAEQE
AKLQRVRGLIRQYGDHLEASSKLVESAIQAMEEPQMAVYLQHSKELLKKITDMSKASMSS
RPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEDEGDGPGEGSEAAVEEDRLDSLEVP
EAAEDVGPRQKPASSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgcttctggcggaggcgcgaagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgttttccaggcctccaacccg
ctgtggcagtcacggggctccagcgccgtgccgtcgggcggccggttccggtgcccgtcg
tgccggcacgaggtggtgctggaccggcacggggtgtacggattgcagcggaacctgctc
gtggagaacatcatcgacatctacaagcaggagtcggcccgaccccttcacgccaaggct
gagcagcacctcatgtgtgaggagcacgaggacgagcgcatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctctgcaaggtcttcggggcacacaaggactgcgaggtg
gccccgctgcccgccgtctaccagcgccagaagagcgagctcagcgacggcattgccatg
ctggtggccgggaacgaccggatccaggccatcatcacgcagatggaggagatctgccac
accatcgaggagaacggccggcggcagaagcagcacctggggctgcggttcgacgccctc
tacggcatcctggaggagcgcaagaaggagctgctgcagagcatcgcggccgagcaggag
gccaagctgcagcgggtccgggggctcatccgccagtacggagaccacctggaggcctcc
tccaaactggtggagtcagccatccaggccatggaggagccccagatggccgtgtacctg
cagcactccaaggaactcctgaaaaagatcacagacatgtccaaggcatcgatgagcagc
cgccctgagcccggctatgagaacatggaccacttctccatcaacgtggactacgtggct
gagatgctgaggaccatcgagttccagacagagcccctgggtgaggatgagggtgatgga
cctggggagggcagtgaggctgcagtggaggaggaccggctggacagcctggaggtgcct
gaagctgctgaagatgtggggccgaggcagaagccagcgagttctccccatggtcagcac
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