Sylvia atricapilla (blackcap): 136358797
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Entry
136358797 CDS
T10263
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136358797 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sati03021
]
136358797 (CPSF3)
03019 Messenger RNA biogenesis [BR:
sati03019
]
136358797 (CPSF3)
Transcription machinery [BR:
sati03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136358797 (CPSF3)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136358797 (CPSF3)
U7-dependent histone pre-mRNA processing factors
136358797 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
136358797
NCBI-ProteinID:
XP_066170917
LinkDB
All DBs
Position
3:complement(15200130..15218718)
Genome browser
AA seq
691 aa
AA seq
DB search
MAAKRKAEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLCYQLQKL
TGDVEEIEIQQKPALKVFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKI
QKAAVSKISKKIDMDVYRKRMEIMLQDMFGEDCVSSKDDSVLCITVDGKTANISLDTRTV
DCEPGSEDDESLREMVELAAQRLYDALSPVY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaagcgcaaggctgaggcgctgatcccggccgaggagagcgaccagctgctg
atccggcccctaggtgctggccaagaagtaggaaggtcatgcatcattctggagtttaaa
ggaagaaaaatcatgcttgattgtggaatccatcctgggctggaaggaatggatgctctt
ccttacatcgatttgatagatccagctgagattgatctcctcctcattagtcacttccat
ttagatcactgtggggctttgccatggtttttacagaaaacaagttttaagggaaggaca
tttatgactcatgccacgaaagctatttacagatggcttctttcagactatgttaaagtc
agtaacatctcagcagatgacatgctgtatacagaaacagaccttgaggaaagcatggac
aagattgagaccatcaacttccatgaagtgaaggaggtggcaggaatcaaattctggtgc
taccacgcaggccacgttctgggagcagccatgtttatgattgaaatagctggtgtgaag
ctcttatatacaggtgatttctcaaggcaggaagacagacacctgatggcagctgagatt
cccaatattaaacccgatattcttataattgaatccacgtatggcactcacatccatgag
aagagggaggagcgggaggcgaggttctgcaacaccgttcacgacatcgtgaacagaggg
ggccgagggctcatccccgtgttcgccctgggtcgagctcaggagctgctcctgatctta
gatgaatactggcagaatcatcctgaactccatgatatccccatatattatgcctcctcc
ttggcaaagaaatgtatggcagtttatcagacatatgtcaatgccatgaacgacaaaatc
cgcaagcaaattaacatcaacaatccttttgttttcaagcacattagtaatctgaagagc
atggatcacttcgatgacattggccccagtgttgtgatggcttctccaggtatgatgcag
agtggcttatccagggagttgtttgagagctggtgcacagataagagaaatggagtcatt
attgcagggtactgcgttgaaggaactcttgctaagcacatcatgtctgaacctgaagag
atcacgactatgtcagggcaaaaactcccactgaagatgtctgtggattacatttctttc
tctgctcacacagattatcaacaaactagtgaatttatccgggccctgaaacctccacat
gtgattttagttcatggtgagcagaatgaaatggccaggttgaaagcagcattgatacgg
gagtatgaggataatgatgaagttcatatagaagttcataatccgaggaatactgaagct
gtgacattaaacttcagaggagaaaaacttgccaaggtgatgggatctttagcagataag
aaaccagagcaaggacagagaatttctggaatcttagttaaaagaaattttaactatcat
atcctttctccatgtgacctctccaattacacagacttggccatgagcacagtgacacag
acacaagccatcccctacacgggccctttcaatctgctttgttaccagctgcagaaactc
acaggtgatgtagaagaaatagaaatccaacaaaagccagctctgaaggttttcaaaaat
attactgtgatccaggaaccaggcatggtagtccttgagtgggtggcaaatcctgctaat
gacatgtatgcagacactgtgacaacagtgatactggaagttcagtcaaatccaaaaatt
cagaaagctgcagtaagtaagatttccaaaaaaatagatatggatgtatataggaagaga
atggaaatcatgcttcaggatatgtttggagaggactgtgtgagctccaaagatgattct
gtgctgtgcatcacagtggatggaaaaactgccaacatttccctggacactcggacagtt
gactgtgagccaggaagcgaagatgatgaatccctgcgtgaaatggtggaactggcagca
cagaggctttatgatgccctcagccctgtatactga
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