Sylvia atricapilla (blackcap): 136359107
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Entry
136359107 CDS
T10263
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136359107 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136359107 (HBS1L)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136359107 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GIP1_N
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
136359107
NCBI-ProteinID:
XP_066171529
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Position
3:complement(56421343..56481705)
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AA seq
687 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPATFAEPLEEEYG
YEGTDAAADCFTPTHQLTEVDRVRLNSCLDQMREVLAESIPEQAMVQAVLDTNFDVQKAL
NLVLSQGSKQNVKTKNKDAVILGKTTKGKTRDSQSARMESEIVPKITKMTVSGKKQSMGF
EVPCALAEENGHPNTPQKGLLPEDASVASGVLEAVSKSTLLPQVVQVSEEQNMVPTPAKK
SSKARPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETPTKVITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQSSDLTQWYKGNCLLEQIDSF
KPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGFIQVGERLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPITKG
FPVLLHYQTVSEPATITRLLSVLHKSTGEVTKKKPKFLAKGQNALVELQTQRPVALELYK
DFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgtccgaggatataactacgatgaagactttgaagatgatgat
gtgtatggccaatcagtagaagatgattactgcatttctccttcaacagcagctcagttt
atttactccagacgagacaaaccagccacatttgctgagccattagaagaagaatatggc
tatgaaggtaccgacgctgctgctgattgttttacacccactcatcagttgactgaagtt
gatagagttcgtcttaattcatgcctggatcaaatgagagaagttttggcagagtccata
ccagaacaagcaatggtgcaagcagtactggatactaattttgatgtacaaaaggctttg
aatcttgtgctttcacaaggcagtaagcaaaatgtgaagaccaagaataaggatgctgtg
attttaggaaagactacaaaaggaaaaacaagggattcccaatcagccagaatggaatct
gaaattgtgccaaaaattaccaaaatgacagtgtctggaaagaaacaatctatgggattt
gaagttccatgtgcgcttgctgaggaaaatggccaccctaatacacctcagaaaggactg
ttacctgaagatgccagcgtagcttctggggtacttgaggctgtctcaaaatctactctt
ttgccgcaagtagtgcaggtttcagaagagcagaatatggtgcctactccagcaaaaaag
tcaagcaaggcaagaccacaaatagatgtgaaagcagagttggagaagcgacaaggagga
aagcaactgctgaatttggtggtaataggacatgttgatgcaggcaaaagtactttaatg
ggtcatttgctctaccttttgggaaatgtgaacaaaagaactatgcacaaatatgaacag
gaatctaaaaaggctggtaaagcttcatttgcttatgcatgggtcttggatgaaactggt
gaagaaagagaaaggggagtgacaatggatgtgggtatgaccaaattcgagacaccaact
aaagtaattacactgatggatgctccaggccacaaagacttcattccaaatatgatcaca
ggagctgcacaggctgatgtggcaattttggttgtggatgctagcagaggagagtttgag
gcagggtttgagacgggtggacaaactcgagaacatggattattagtgcgctctcttgga
gtgacacagttggctgttgcagtcaataaaatggaccaggtcaattggcagcaggaaaga
tttcaggaaattacaagtaagcttggccaatttcttaagcaagctggctttaaggaatca
gatgtggcttatatcccaacaagtggccttggtggtgaaaatctagtcacaaggggtcag
tcaagtgacctcacacaatggtacaaaggaaactgtttgttagagcaaattgattctttc
aagccaccacagagatcagtggataaaccatttagactgtgtgttgctgatgtttttaaa
gaccaaggttcaggattttgtgtgactggtaaaatagaagcaggctttattcaggttgga
gaacgacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcac
gatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgtgggctgtgtgttttgtgatcccaaggagcccattaaagtt
tgcactcggttcagagctcgggttctcatcttcaatattgaggtcccaatcactaaagga
tttcctgtgcttttacactatcaaacagtaagtgaacctgctactattacaagactgttg
agtgtcctgcacaaaagcactggtgaagtgacgaagaaaaaacctaagttcttggctaaa
ggtcagaatgctctagtagaactacaaactcaaagacctgttgctctagagttgtacaaa
gattttaaggagctggggaggtttatgttacgctacagtggttccactattgctgcagga
gttgttacagagattaaagagtga
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