Sylvia atricapilla (blackcap): 136359147
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Entry
136359147 CDS
T10263
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
sati Sylvia atricapilla (blackcap)
Brite
Transcription machinery [BR:
sati03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136359147 (SCAF8)
Spliceosome [BR:
sati03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
136359147 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136359147
NCBI-ProteinID:
XP_066171604
LinkDB
All DBs
Position
3:59377742..59465748
Genome browser
AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETSSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTSLV
QPPLPIAQETMKDVPFSGLVLPVGTVTSNLATPTLSAGSVFNPLPINKLESDDKGSHLTD
LQISSSENNRSVQSDVSSSSGLVGGVQPPTVSSNSGLTGEGPPPTVSSSSGLAGGVQPPS
VSSSSGLVGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAAVPPPN
ASSSSGLLAGVHPPGVSSSPGLLTGMQPPSVSSSSGALAGVQPPSVSSNSGLLIMPPPNV
STSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHLNISSQRMPGMPLIDIRPGLMPHSPG
PRFPLMQPGMPPQRPIPPPAILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNIS
NPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIVRPPV
DGREHFTRPHIDIRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQDD
PELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcacgttgtacagagtgttgagaaattcattcaaaagtgcaagccagagtacaaggtg
cctggtctgtatgtcattgattccattgtgagacagtcccggcatcagtttggacaagaa
aaggatgtgtttgcgccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cctgtggtgacccccgtcttgcccagcactacagctgctatgagcaacaatacaccaggt
acacctgtgactccagttaccccagccaatgtggcgcagagtttacctgatccttgggtg
tctcagattgctaacacagacactcttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcgctacttcaagccttggatgctggtcttgttgtccagttacaggccctcacagcacaa
ctcacagctgcagctgctgctgctaacacacttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagagcct
aaaaaggaaacttcctcttctcaactgccgttagtaccagaatctgtgaacaactcactt
tttcaccaactagctgaacagctacagcaacaaaatttagaacatctcagacaacagctt
ctggagcagcagcagcctcaaaaggcgagccctgaagagaaccaagaaggaaattttggt
tcagagcattctgcatcaccatcacaagggagtagtcaacagcagtttttggaagtggaa
gcaaatgtagatgattcaatggatattcaacaacaggacatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatcacgg
tctggttctcgtaagcggaaacacagaaaacgttcacgctcaagatcaagagaaaggaag
agaaagtcatctcggtcatactccagtgaaagaagggctcgggaaagggaaaaagaacgt
cagaaaaagggattgcctcctatacggtcaaaaacactaagcgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacacagcaagatttaacaaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagaggatgtgcttatgtatgtatg
gtacatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcatataaaatt
ggatctaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaag
caattttgggatgtggatctgggagtttcctatattccatgggagaaagtgaaattggat
gatttggaaggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctaca
gttgataagagtaccgttattacaacacagacagaagcttacacacaaccagtcactatg
cttcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggttatagcccaattcctcctccacccttcttgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcctccagtcccacctgtt
gtcccaccacctgttgtcccgccacctgttgtcccaccagttgttccaacgtctttagta
caacctccattaccaattgcacaagagacaatgaaggatgttcctttttctggccttgtt
ctaccagttggcacagttactagtaatctggctactccaacattatctgctggaagtgtt
tttaatcccctgccaatcaacaaactagagtcagatgacaaaggatcacatctcacagac
cttcaaatttcttccagtgaaaacaatagatctgtgcaaagtgatgtctcaagtagctct
ggacttgttggaggagtgcagccacccactgtctcaagcaattctgggcttactggagaa
gggccaccccccactgtgtcaagtagctctggacttgcagggggagtacagccacccagc
gtttcaagcagctctggacttgtaggaggagtgcaaccaccaactgtttccagcaattct
ggtcttgctggaggaatgcagctacctgctgtctccagtagctcttctcttgctggcggg
attcagccaactaatgcctcaagtagctctggacttatggctgcagtgccaccaccaaat
gcctcaagcagctcagggcttctagctggagttcatccacctggtgtctcaagcagccct
ggccttctgactggaatgcagccacccagtgtgtccagcagttcaggagctctggcagga
gtacagccaccaagtgtttcaagcaactctgggcttctcataatgccaccacccaatgtt
tcaactagttctggacttatgggagtgccaccaccaaatatttcaagtaattctggactt
ctggcaatgcagcatccagctgctgttccaaacatgcctcatttaaatatcagtagtcaa
agaatgccaggaatgcctcttatagatatccgtccaggcctaatgcctcattcgcctgga
ccaaggtttccattaatgcagccaggaatgccaccacagcgtcctattcctcctcctgca
atccttgatccatctctccacccaccaccacctcgaggtccttttcctcctggagatatt
tttaatcaaacagaaagaccttttggaacaccaggaagacaaaatatcgataacatttct
aatccagagaagaggctaccacttggaggtgataacattcaacaggagggagacagagat
tatcgctttcctccagtggaaaaccgagataatcttaacaggccatctccagtggatgtc
agagattctgttggacgaccaccagttgatccaagagagggtatagtaaggcctccagta
gatggaagagagcatttcacaagaccacatatagacattagagaaaattttggaagacca
ggtatagataaccttggccgaagagagcattttggtttcaattcagacaagcactgggga
cagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggccctaaa
ggcttccatgaagacagagagcggtttcggcatgtaaactataggtttgatagcagaagt
ggtcccagttggaatagaggatttgaacaagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaatt
aatggaaacaggtttggaagagacagaatgtcaaacaactggatcccgcctccacatcca
cgagtttttgaatattttgatggggccacttcccaacgcaaagctgataatatgccccag
gtaaatggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggatgat
ccagaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgacaca
gaagctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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