Sylvia atricapilla (blackcap): 136359208
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Entry
136359208 CDS
T10263
Symbol
SHPRH
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sati04121
]
136359208 (SHPRH)
Enzymes [BR:
sati01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136359208 (SHPRH)
Ubiquitin system [BR:
sati04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
136359208 (SHPRH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
PHD
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
TPR_12
PEP-utilisers_N
TPR_2
TPR_10
Motif
Other DBs
NCBI-GeneID:
136359208
NCBI-ProteinID:
XP_066171729
LinkDB
All DBs
Position
3:complement(65573559..65633861)
Genome browser
AA seq
1695 aa
AA seq
DB search
MSSRRKRAPPSKVDEEKKKKLCWNMHEDRRNEVVALDDEVTNEDHIPVPSTSAPFIVIND
DSTDEDLVRKEGSGSKSVKFLTVNDEEDCCSILTPVSVQLNIIVLPYRADGSWKALLGEF
ALHLPSEQILTDKFHDRSFTLMRGDSEDELQVCVHERSEEEHSNETKEYLGTYEQRILVE
ATLSGEILEGLRWLQKKKIIGLYQRPGEPQALKVGIYLLEAGLSKPEFLSDGGGRPKKAN
QMIQKLMEKFYSFLIPDELEEDEEESDTELERQNIEELYDFVRHTHQQDIQLLRKDVQHP
ALIPILRPYQSEAVNWMLHRENHASTPSSENALHFLWREVITLDGVKIYYNPFTGCIIRE
YPTAGPQWPGGILADEMGLGKTVEVLALILNHTGPDVKQDDLTLPEGKLVNFFVPPQPLE
GNKKKKPKEMEPKLKEKIQYPSLRVMILAAVKEMNVKKGASIIAIFKYISSMYRYDTQRN
RRLLKRTLEKLIAEQVVEQVKGHGLAGSFKLGKNYKEQKKRERSKEQVARTPENTQKKQL
VDDKTQTKESRNNDVTSESVLKAASHENIAMEEHDYCTTSKNNRKSEADHGNSVEEKNLK
QETVVPKSPDFHGSLLVSSDMSGHPDVDVSKTTAAVQQEIPKVQSSLSHERAGSSVQHTS
SVFPFNTSEYRFECICGELGLADYKARVQCLKCYLWQHVECVNYKEENLKSRPFYCPHCL
VAMKPVPTGATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLAEQEV
VITTYDVLRTELNYVDIPHSNSEDGRRFRNQKRYMAIPSPLVAVEWWRICLDEAQMVECT
TAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLILFLGVDPYWVKHWWDQLLYRPYCRK
NPRPLYSLIAKIMWRSAKKDVIDQIQIPPQTENIHWLNFSPVERHFYHRQHEVCCQDALA
KLRKISDWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLAS
LQKKCRTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKEKLKTDSLQ
RLHSTHNLMELLAKHPGIPPTLRDSRLAEEAEQLRQHYMSKSNAEVAEAHQALQPVLQTI
RELQRKIHSRSPWWLDVIQTAIQYAIDEELVQRVQNEITCNYKQQTNKFSMAEKFRDCRG
LQYLLTTQLDEVKKFQKIVREAVKNLEGPPSKQVIEAATICHLRPVRLPLNNCVFCKADE
LFTEYESKLFMHSVKGQMAIFEEMIEDQEGLVDDRLPTTSRGLWATSETERALKALLSFA
KAHRMDARLTEEGSVFLELFEAWKKEYKLLHEYWMVLRDHVSAIDELAMATERLRVRHPD
EPKPNPPVLHIIEPHEVEQNRVKLLNDKAVAKSQLQKKLGQLLYLTNLEKSQDKTTGGVN
PEPCPICARQLGMQWAVLTCGHCFCNECIAIIIQQYSVGTRRSSIKCAICRQTTSHKEIS
YVFTAEAANQEDDIPVKGSHSTKVEAVVRTLKRIQYKDPGAKSLVFSTWQDVLDIISKAL
YDNNMVFSQINGISKFQENLSAFKYDPNINILLLPLHTGSNGLNIIEATHVLLVEPILNP
AHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQTMLKTVDRSHTSSSMKQSEASVLTV
ADLAELFTEETEELE
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcgccgaaaacgtgcgcctccgtccaaagtggatgaggagaagaagaaaaag
ctctgctggaatatgcacgaagaccggagaaatgaggtggtggcattagatgatgaagta
actaatgaggaccatatcccagttccaagcacttctgcacccttcattgttataaatgat
gatagcactgatgaagatcttgtacggaaagaaggcagtggctcaaaatctgttaagttt
ttgacagttaacgatgaagaagactgttgttccatcttgactcctgtgtctgtacagctg
aacattatagtcttgccataccgtgcagatgggtcctggaaggctttgttgggagaattt
gctcttcatctcccttctgagcaaattctaactgacaaattccatgacaggagctttact
ttaatgcgaggagactctgaggatgagctgcaggtttgtgttcatgaaagaagtgaagag
gagcacagtaatgaaacaaaagaatacctgggcacttatgaacaacgtattctggtggaa
gcaactttaagtggtgaaatattggaaggcttgagatggttgcaaaagaagaagataatt
ggactttatcaaagacctggagagcctcaggctttaaaggttggaatttaccttcttgaa
gctgggcttagtaaaccagaatttctcagtgatggaggtggaagacctaaaaaagctaat
cagatgattcaaaaactcatggaaaagttttacagttttttaattccagatgagctggag
gaagatgaggaagaatctgacacagaactagaacgacaaaatattgaagaactttatgac
tttgtaaggcacacccatcagcaggatatccaattactgagaaaggatgtgcagcatcct
gcattaattcccattctgaggccataccaaagtgaggctgtgaactggatgcttcaccga
gagaaccacgcaagtactccaagcagtgaaaatgcactgcacttcttgtggcgggaggtg
atcactctggacggagtaaaaatctactataatccatttactggctgtattatccgtgag
tatccaactgctggaccccagtggcctggaggtatcttggcagatgagatgggtcttgga
aaaacagtagaagtgttggctcttattctgaatcatactggaccagatgtcaaacaagat
gatctgacattacccgagggtaagcttgtgaacttctttgttccacctcaacctttagaa
ggaaataaaaagaaaaaaccaaaggaaatggagcctaaattaaaggaaaaaatacagtat
cccagcttaagagtaatgatactagcagctgtaaaggaaatgaatgtgaagaaaggagca
tccattattgcaatatttaagtacatcagttctatgtataggtatgacacgcagagaaat
aggcggcttctcaaaagaactctagaaaaactaattgcagaacaggtggtggaacaagtt
aaaggacatggtctggctgggtctttcaagctgggaaagaattacaaggaacagaaaaag
cgagaaagaagcaaagagcaggtagcaaggactccagaaaacactcagaagaagcaattg
gttgatgataaaactcaaaccaaagaatcaagaaacaatgatgtaacatctgaaagtgtc
ttgaaagctgcctcacatgagaatatcgccatggaagaacatgattattgtacaactagt
aaaaataaccggaaatctgaagcagatcatgggaactctgtagaagagaaaaatcttaag
caagaaactgtagtcccaaagtctcctgattttcatggcagcctccttgtctccagtgac
atgagcggtcatcctgatgttgatgtttctaaaactacagctgctgtgcagcaggaaatc
ccaaaggtccagtcctcactttctcatgaacgtgctggcagtagcgtacaacataccagt
tctgtatttccatttaatacgtctgaatatcgttttgaatgcatctgtggtgagctcggg
ctggctgactacaaagctcgtgtgcagtgcctgaaatgttacctgtggcagcatgtagaa
tgtgtgaactacaaagaggagaacctgaagagcaggcccttctactgtccccattgcctt
gtggcaatgaaaccagttcccactggagcgactctgatcatttctccgagttctatttgt
caccagtgggtagatgagatcaacaggcatgtaaggtcatcatctcttcgagttctggtg
tatcaaggtgtgaagaagcacggctttctgcagccgcacatgctggctgagcaggaggtg
gtgatcaccacgtatgacgtgctgcgcaccgagctgaactacgtggacattccccacagc
aacagcgaggacgggcgccgcttcaggaaccagaaacgctacatggccatccccagcccc
ttggtggcagtggagtggtggaggatctgcctcgatgaagcacaaatggttgaatgcact
actgcaaaggctgctgaaatggcactccgtttgagtggaatcaatcgctggtgtgtcagt
ggcactcctgtgcagcgaggattagaagatttgtatggattaatcctttttcttggagtt
gatccttactgggtcaaacattggtgggaccagctgctgtatcgaccttattgtaggaaa
aatccccggcctctctacagtctaattgcgaagataatgtggagatcagcaaagaaggat
gtgattgaccaaattcaaatcccccctcagacagaaaatatacactggcttaacttctct
cctgtggagagacacttctaccatcgccagcacgaggtgtgctgccaggatgcattggca
aaactcaggaagatttcggactggactcttaagcttagtagcctagatagaaggactgtg
acttctattctgtaccctttgttacggctgaggcaggcctgctgtcacccacaagctgtt
cggggagagttcctgccactgcagaaaagcaccatgaccatggaggagctgttggcatct
ctgcaaaaaaagtgtcggacagagtgtgaagaggctcaccgacagctggtgtgtgctctt
aatggcttagctggtatccatatcattaaaggagaatatgcattggctgcggaactgtac
agagaagtactaagatcatctgaagagcacaaagaaaagctcaaaacagattccttgcaa
agacttcattctacacataatttgatggaattgttggcaaagcacccaggaattcctcca
actttgcgtgatagccgacttgcagaagaggcagaacaacttcgacagcattatatgagc
aaatccaacgcagaagttgcagaagcccatcaggccttacagccagttcttcaaaccatt
cgggaacttcagagaaagatacactcacgttctccttggtggttggatgtcatccaaaca
gcgatacagtatgccatcgatgaggagcttgttcagcgtgtgcaaaacgaaataacctgc
aactacaaacagcagacaaataaattctccatggcagagaaattccgtgactgcagaggc
cttcaatacctactcacaacccagctggatgaagtgaagaagttccagaagattgtaaga
gaagcagtgaaaaacttagaagggcctccttctaagcaggttattgaggctgccactatc
tgccatttgcgacctgttagactgccacttaacaactgtgtcttttgtaaggctgacgaa
ttgttcacagaatatgagtcaaagctctttatgcatagtgttaaaggccaaatggcaata
tttgaggagatgatagaagaccaggaagggcttgtcgatgaccgtttgcccaccacaagc
agagggctctgggcaaccagtgaaactgagcgtgccttgaaagctcttctctcctttgcc
aaagctcaccgaatggacgctaggcttaccgaagaagggagcgtattcctggagctcttt
gaagcatggaaaaaggagtataagttactccatgagtattggatggttcttagggatcac
gtgtctgctattgatgagctggcaatggcgacagaacggctgagagtgcgtcaccctgat
gagccaaaaccaaacccaccagtgctccacattatagaaccccatgaggtagagcaaaat
cgagtgaaacttctgaatgacaaggcagttgcgaaatcacagcttcaaaagaaattagga
caacttctgtacctcactaatctggagaaatctcaggataaaactactggaggagttaac
ccagaaccatgtccaatctgtgcacgtcaactgggaatgcagtgggcagtgctgacgtgt
ggacactgtttttgtaatgagtgcatagccatcatcatccagcagtacagcgttggcacc
cgccggagctccattaaatgtgccatttgcaggcagacaacatctcataaagaaatatct
tatgtcttcactgcagaagctgcaaatcaggaggatgatattcctgtaaagggaagtcac
tccaccaaagtggaagctgtggtccgaacactgaagagaattcaatataaagatccaggg
gctaagtccttagttttctctacgtggcaagatgtgttggatataatttcaaaagctttg
tatgacaacaacatggttttttctcagatcaatggaataagtaaatttcaggaaaacctg
tctgcatttaaatatgatcccaacatcaatattttgctgctgcctcttcacactggttcc
aatggactcaacatcatcgaagcaactcatgttctgctcgtggagcccattctgaatcca
gcacatgagctacaggctattggcagagtacatcgtattggccagacaaaatccacaatt
gtgcataggttcctgataaaagcaacaatagaagagagaatgcagactatgctgaaaact
gtagatagaagccacacaagctcttccatgaaacagtcagaagcctcagtgttgacagtg
gcagatttggctgaactttttacagaggaaactgaagaacttgagtaa
DBGET
integrated database retrieval system
