Sylvia atricapilla (blackcap): 136359323
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Entry
136359323 CDS
T10263
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati04120
Ubiquitin mediated proteolysis
sati04137
Mitophagy - animal
sati04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
136359323 (PRKN)
04120 Ubiquitin mediated proteolysis
136359323 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
136359323 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sati04131
]
136359323 (PRKN)
04121 Ubiquitin system [BR:
sati04121
]
136359323 (PRKN)
03029 Mitochondrial biogenesis [BR:
sati03029
]
136359323 (PRKN)
Enzymes [BR:
sati01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
136359323 (PRKN)
Membrane trafficking [BR:
sati04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
136359323 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
136359323 (PRKN)
Xenophagy
Other xenophagy associated proteins
136359323 (PRKN)
Ubiquitin system [BR:
sati04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
136359323 (PRKN)
Mitochondrial biogenesis [BR:
sati03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
136359323 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
136359323
NCBI-ProteinID:
XP_066171954
LinkDB
All DBs
Position
3:76325413..76999917
Genome browser
AA seq
463 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVGSDSSILQLKEAVARRQGVPADQLRVIFAGRELSNDLTLQNCD
LAQQSIVHIVQSPQNSQNKEKTEDSCAGGVLKALNREPESLTRIDLSTSILPSVSAGLAV
ILDPEKSSVSLPSEKSGAASYNSFYVFCKNFCQAVKPGKLRVRCNVCKQGTLTLARGPSC
WDDVLIPNRIGGVCQSRGCNGNVAEFYFKCGAHPTADSETSVALNLVTTNSRSITCITCT
DIRSPVLVFQCVHRHVICLDCFHLYCVTMLNDRQFIHDPELGYSLPCVAGCPDSLIKELH
HFRILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEPGLRRILCEPGNGIGCGS
VFCRECKEEFHEGECNSLLSPQGAMAQKGYAVDEHAAMQARWEEASRETIKKTTKPCPNC
NIPVEKNGGCMHMKCPRPQCRFEWCWNCGLEWNRTCMGNHWFD
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtcaggttcaactccagccatggcttccccgtggaggttggttcagat
tccagcatcctccagctgaaggaggcagttgcccggcgacagggagttccagctgaccag
ctgcgggtgatttttgcagggagggagctcagcaatgacttgacactgcagaactgtgac
ctggcccagcagagcattgttcatattgttcagagtccacagaacagtcagaacaaggag
aagacagaagatagctgtgctggaggtgttctaaaagccttgaatagagaacctgagagc
ttaactcgcattgatctcagtaccagcatccttccatcagtctctgcggggctggcagtt
attctggatcctgaaaaaagcagtgtttcacttccctctgaaaaatcaggtgcagcaagt
tacaacagtttttatgttttttgcaaaaatttctgccaagctgtgaagcctggaaaactg
agggtccgctgcaatgtgtgtaaacaaggaaccctgacgctggcaaggggcccatcttgc
tgggatgacgtgctaattcccaacagaataggaggtgtttgccagtcccgagggtgcaat
ggaaatgtagcggagttttactttaaatgtggagcacacccaacggctgacagtgaaaca
tctgtggctttgaacctcgttacaacaaacagccgctctatcacatgtataacatgcaca
gatattaggagtcctgtgcttgtgttccaatgtgtgcatcgccatgtcatttgcctggac
tgcttccatctgtactgtgtgaccatgctgaatgaccgccagttcatccatgacccggag
cttggctattccctcccctgtgtagctggctgtccagattccttgattaaagagcttcat
cacttcaggattctgggagaagaacagtacaaccggtaccagcgctatggggccgaggaa
tgcgtgctgcagatgggaggagtgctgtgcccaacccctggctgtggggcagggctgctg
cctgagccagggctgaggagaatcctgtgtgagccaggcaacgggatcggctgtgggtcc
gtgttctgccgtgaatgtaaagaagaattccatgaaggggaatgcaactctctcctcagc
ccacagggagccatggcccagaaggggtacgcggtggatgagcacgcagccatgcaagct
cgatgggaagaagcatctcgagaaacaatcaagaagacaaccaagccatgccccaactgc
aatattccagtagaaaaaaacggtggctgcatgcacatgaaatgtcctcgccctcagtgc
agatttgagtggtgctggaactgtggcctggagtggaacagaacctgcatgggaaatcat
tggtttgactag
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