Sylvia atricapilla (blackcap): 136359587
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Entry
136359587 CDS
T10263
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136359587 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sati03400
]
136359587 (MSH2)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136359587 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
136359587
NCBI-ProteinID:
XP_066172434
LinkDB
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Position
3:98629584..98674765
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AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARDLF
RTRAVIRQLAGAPGAQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGCVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGDMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGTHQMLLLAVFITPLTDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRITCKEEKALRNNS
KYTVIDTQKNGVKFTNSKLSTINDEYIRNREEYEEAQDAIVKEIINIASGYAEPMQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKIYREREEGEKIIQDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcccggctggccgcccgcgacctcttc
cgtacccgcgccgtcatccggcagctggcaggggcaccgggagctcagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttcttgttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaggaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgatatgtccacagccattggggttgtgggggttaagctctctgctgctgatgga
cagagagtagtcggagtgggctgtgtcgacactacactgagaaaattgagtgtttgtgag
ttcccagataatgatcagttctcaaaccttgaagctctactggttcaactgggcccaaag
gagtgtgtgctgccaggaggagagactgcaggagacatgggaaaactgagacaagtcatt
cagaggggaggaatcctgattacagacaggaagaaagcagatttcacaacaaaagatatt
gttcaggatctcaatcgcttgttgaaatcgaaaaaagaagagcagctgaatagtgcagca
ctgccggagatggaaaagcaggttgctgtttcgtctttgtcggctgttatcaagtttttg
gagttgctttcagatgagtctaattttggacaatttgaactgactacttttgatcttagt
caatatatggttctagacaatgcagctgttcaagccctcaacctttttcagagttctgtg
gaaaatgctaatactgcacagtctctagctggtttactgaataaatgcagaacccctcaa
ggtcaaagactagttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggctgaatttggttgaagcttttgtgatggatccagaactacgtcagtgccttcaa
gaagatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagcgacaa
gcagcaaacttacaggactgttaccgaatgtaccaggctatcaatcaactgcctaatgtt
gtacaagcactagaaaaacatgaaggaactcaccagatgttgttgttggctgtatttata
acacctcttactgatatctgctctgacttctcaaagtttttggagatgatagaaacaaca
ctggacatggaaaaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtccttactaaag
actgcagccaaagagctaggtttggaagctgggaaaagtatcaaactggagacaaattca
cagtttggacatcactttaggataacttgtaaggaggaaaaagctctccgtaacaattca
aaatatacagtcattgatacacagaagaatggtgtcaaatttactaacagcaaactgagc
accatcaatgatgaatatataaggaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcccatgcagacgatgaatgat
gtgatagctcagctggatgccattgtcagctttgcccacgtgtccaacggagccccggtg
ccctacgtccggcctgtcattctggagaagggacaaggcaggatagtgctgaaaggggcc
aggcatccctgcatcgaagtgcaggatgaggtggccttcatccctaatgacattacattt
gagaagggcaagcagatgttccacattattactggccctaatatgggaggaaaatcaaca
tacatccgacagacaggggtgattgttcttatggcccaaattgggtgttttgtgccctgt
gagtctgcagaaataaccattgtggattgtatcctggctcgggtgggagcaggggacagc
cagctgaaaggagtgtctactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcaactgaaaactccttgataatcattgatgagctgggaagaggaacttctacctac
gatggctttggcttagcgtgggccatctcagaatacattgccagcaaaatctgtgggttt
gccatgtttgctacacactttcatgagctcacagctcttgctgaccaagtgccaacagta
aataacctccatgtcactgctctgaccagtgatgacacactgacaatgctttatcgtgtc
aaggaaggtgtttgtgaccagagctttggaatacatgtagcagagctggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccagccaagaaaatatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagaagacatcaaagtcaagttgaaacagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcgaacaaaagttacatcatga
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