Sylvia atricapilla (blackcap): 136359589
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Entry
136359589 CDS
T10263
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136359589 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sati03400
]
136359589 (MSH6)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136359589 (MSH6)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
136359589
NCBI-ProteinID:
XP_066172436
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Position
3:98824269..98838452
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AA seq
1260 aa
AA seq
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MEGYPWWPCLIYNHPTERTIVRGKGKSTRIHVQFFDDSPTRGWVSVKYLKPYKGSSDRET
MKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCNEPSDTEEEEEETEEISEDASGN
SEDCSSEEDVKSKKRAISRERAVKSKKRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSG
VDENESSDTETESVAESPIKVPSKRKRSEVKKPAKRSSLGNGCSETPKRAATVSSEAKSK
LTSFAAPESFESQANACSGGTGGISVWEHEKLDWLQEGKRRDAHRRRQGDPDYDPCTLYV
PEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYEMYHMDAVTGVNELGLIFMKGTWAH
SGFPEIAFGRFSSILVQKGYKVVRVEQTETPEMMEARCRSVGHSGRFDKVMRREICRIIT
KGTQTYSVMDCDPSENHSKFLLCVKEKCDSAGTRVYGVCFVDTSVGKFHVGQFPDDRHCS
RFRTLIAHYTPVQVLFEKGNLSADTQKILKGSLVSCIQEGLISGSQFWNASKTLKVLLEE
GYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKRCLIDQEL
LSQANFEEYVPVDIATAKAMGSSSLFAKTGQRMVLDGVTLMNLEVLQNGTNGTTEGTLLE
RIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPDLER
LLSKIHSIGSPLKSQNHPDSRAIFYEELRYSKKKIADFLSALEGFKIMNEIVEFMEEIAS
DFKSRVLKQLVTRKTVNPDGRFPDLNAELTRWDTAFDHNHARKTGVITPKAGFDTDYDKA
LDDIRTIQEDLRKYLDKQRKLLGLKSVQYWGTGKNRYQLEIPESAVSRNLPEEYELRSSR
KGYKRYWTKEIEKMLAAMVSAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLDVL
MSLAHYSQGGDGPLCRPVILLPMDNAAPFLELRNSRHPCITKTFFGDDFIPNDIVIGIKD
EGSSSEASCVLVTGPNMGGKSTLMRQAGLLVVMAQLGCYVPAEACRLTPIDRVFTRLGAS
DRIMAGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAERIR
CRTLFSTHYHSLVEDYSHSAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGF
NAAKLADIPEEVIQKGHRKAKEFEKITISLRIFRYLCQVVDGAISDADAVQKLTAMINQL
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccctggtggccgtgtctcatctacaaccaccccactgaaaggacaata
gtcagaggaaaaggaaaatccactcgtatccacgtgcagttctttgatgacagccctaca
aggggttgggtcagtgttaaatacctgaagccatataaaggttcatcagacagggagacg
atgaagggaggtatgttttacagcacaaagcctgaaattaaaagagccatggtactggca
gacgatgccatgagcaaagataaaaccaagaggcttgaactggcagtatgcaatgaacct
tcagacacagaggaggaagaggaagaaactgaggagataagtgaagatgcatcaggcaac
agtgaagactgcagtagtgaggaggacgtgaaaagcaaaaagcgagcgataagcagggaa
agagctgtaaaatccaagaaaaggagagtgttggattctgacagtgaccacgatggctct
gatgtggagttcaagcctgatgggaaagaagcagcaagcagtgaggaagccagcagtggg
gtggatgaaaatgagtcttctgacacagagacagagagtgttgcagagagccccataaaa
gtcccttctaagcgaaagagaagtgaggtgaaaaagcctgctaaaaggagtagcttggga
aatggatgttctgaaacacccaaaagagcagcaacagtatcttcagaagccaagtctaag
ctgacgtcatttgcagcacctgaaagttttgaatctcaagcaaatgcttgcagtggaggc
actggtggcatctcagtgtgggaacacgagaagcttgactggctgcaagaagggaagagg
agagatgcacataggaggcgtcagggtgaccctgattacgacccctgtactctgtatgtg
cctgaggattatctcaacaagtgcacgccgggtgtgcggaggtggtggcagctcaaaagc
cagaactttgatgctgtgatttgctacaaggttggaaagttctatgagatgtatcacatg
gatgcagtcactggcgtgaatgagttgggcctgatcttcatgaagggcacctgggcccac
tcaggtttcccagaaattgcttttggccggttctccagtatcctggtgcagaagggctac
aaggtggtgcgcgtggagcagacggaaacgccggaaatgatggaagcgcgctgcaggtcg
gtggggcactcgggcaggtttgacaaggtgatgcgccgggagatctgcaggatcatcacc
aagggaacccagacctacagcgtcatggactgcgacccctccgagaaccacagcaagttc
ctgctgtgcgtgaaggagaagtgcgactcggccgggacgcgcgtgtacggggtctgcttc
gtcgacacctccgtggggaagttccacgttggccaattcccagatgaccgccactgctcc
aggtttaggactttgatagctcattacacccctgtgcaggtgctgtttgagaaggggaac
ctgtctgcggacacacagaagatactgaagggctcacttgtttcttgcattcaggaaggg
ctgatctcgggttcccagttctggaatgcatctaaaacactaaaagtccttcttgaggaa
ggatatttcaaggagaagcagaattctgaaaatggatgttctctgccctctgtaatcaaa
tctctgacttcagagagtgactccctgggattaactcctggtgaaaacagtgaattagct
ttgtcagctcttgggggatgtgtcttctatctcaaaagatgtctgattgatcaggagctg
ttatcacaggcaaactttgaggaatacgtccctgtggatattgctactgcaaaagccatg
ggttcaagtagtttgtttgccaaaactggccagcggatggtgctggatggagtcaccctg
atgaacttggaagtcctgcagaatggaaccaatggaaccacagaaggaactttgctggaa
aggattgattcttgttgtacaccatttgggaagcgactcctgaaacagtggctctgcgct
ccgctttgtaatcctaaatccatcaatgatcgtttggatgctgttgaggacctcctggca
gtgccagataaaatgtctgaagtcagtgagcacctcaagaaactgcctgaccttgaaaga
ctgctcagcaaaattcacagcattggttcaccactcaaaagtcagaatcatcctgacagc
agggccatcttttatgaagaactcagatacagcaaaaaaaaaatcgctgactttctgtct
gccctggagggattcaaaataatgaatgaaattgtcgaattcatggaggagattgccagt
gacttcaaatccagagtcctgaagcagctggtcacccgcaaaaccgtaaatcccgatggc
cgcttcccagacctgaatgcagagctcacaaggtgggacactgcctttgatcacaaccat
gctcggaagacaggagtgattaccccaaaagcaggttttgacactgattatgacaaagca
ctggatgatatcagaactatccaggaagatcttcggaagtacctggataagcaacgcaag
ctgcttgggttgaaatccgtgcagtactggggaacaggcaagaaccggtaccagctggaa
atcccagaaagtgccgtatctcgtaacctgcccgaggagtacgagctgaggtcgagcagg
aagggctacaagcgctactggaccaaggagatcgagaagatgctggctgccatggtgagc
gccgaggagcgccgcgacgccgccctcaaggactgcatgaggcgcctcttctacaacttc
gacaagaacagcaaggactggcagacagctgtggagtgcattgctgtgctggatgtcttg
atgtcccttgctcactacagtcaaggtggtgatggacccctgtgcagacctgtaatcctg
ctgcctatggataatgctgctcccttcctggaacttagaaattcccgccatccatgcatc
acaaaaactttctttggggatgattttattcccaacgacatcgtgataggcatcaaggat
gaaggcagcagcagtgaggcctcctgtgtgttggtaactggcccaaacatgggtggcaaa
tctacgcttatgagacaggctggtctcctggtggtcatggcccagctggggtgctacgtg
cccgcggaagcctgcaggctcacgcccatcgaccgcgtgttcacacggctcggcgcctcc
gacaggatcatggccggtgaaagtaccttctttgttgaattgagtgagacttccagcatt
ctgcagcatgcaacagagcattcccttgttctcgtggatgaattgggcagaggcacggcc
acgtttgacggaacagccatagcgagcgcggtggtgaaggagctggcagagaggatccgc
tgccggacgctcttctccactcactaccactccctggtggaggactattcccacagcgcg
gccgtgcgcctgggacacatggcatgcatggttgaaaatgagagtgaagatccaagccag
gaaactattacgttcctgtacaagttcattgaaggagcctgcccaaagagctatggcttc
aatgcagcaaaacttgcagatattccagaggaagtcattcagaaggggcacagaaaagcc
aaagagtttgaaaaaataaccatctcactgagaatatttaggtacctgtgccaggtggtg
gatggagcgatcagtgatgcagacgcagttcagaaactcacggcaatgatcaaccagctt
tag
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