Sylvia atricapilla (blackcap): 136360239
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Entry
136360239 CDS
T10263
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sati04131
]
136360239 (VPS50)
Membrane trafficking [BR:
sati04131
]
Protein recycling
Others
EARP complex
136360239 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
136360239
NCBI-ProteinID:
XP_066173417
LinkDB
All DBs
Position
1:23726229..23803569
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AA seq
967 aa
AA seq
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MQKIKSLMTRQGLRSPQESVNDLSPIESFRIPTKEELREVHEEPTDPQAQQEIINSIEEV
YFSNDSFDIVKYELERLPPVLSLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVEELE
RVTSLQSGLQLAAVICTNGRRHLNIAKEGFTQTSLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEAAVVSSV
SDGNNVVGAEENSFDRNYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLD
VISRLMQVGEEFCGSKSEVLQESIRRQSVNYFKTYHRTRLEELRMFLENETWELCPVKSS
FSILQLHEFKFMEQSRSPSVSPSKQPASAVSSTVTLFEQYCNGGNPFEIQADSKDDETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPIKSVSRETLKSRKRSDY
NLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DMFESTGLGLSSSRLRTTLNRIQESLIDLEVSADPSGTLTAAEERKEKVPSPHLSHLVVL
TSGNSLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAAKKPFLQQFYSQTVSTASELR
KPVYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNVYVDALLKEFEEFNRRLNDVSKRV
RIPLPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPI
PDKEFVETYIKAYYLTENDMECWIKEHREYSTKQLTNLVNICLGTYINKKARQKLLATID
DIDRPKR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctgatgacccgccagggtctaagaagtcctcaggagagtgtt
aatgacctcagtcctatcgaaagctttcggattcctactaaggaggagctcagagaagta
catgaagaaccaactgatcctcaggcacaacaggaaataattaacagcattgaagaagtt
tatttttccaatgactcctttgatattgtgaaatatgagttagagaggcttcctccagta
cttagtcttcaagaactggaagagtacagagacaaactaaaacaacagcaagctgctgta
tctaagaaagttgcagacttaatccttgagaaacagcctgcatatgttgaggaacttgaa
cgtgttacatcattacagagtggccttcagttagcagcggttatttgcacaaatggaaga
agacacctgaatatagcaaaggaaggcttcacgcaaactagtttggggctccttgcaaat
cagaggaaacgacagttgcttattggacttctaaagtctctgagaacaataaaaacactg
caaaggactgatgtgcgtttgagtgagatgttggaggaagaggattatccaggagctatt
cagctgtgcttggaatgccagaaagctgccagcactttcaaacactacagttgtataagt
gagttaaattcaaaactgcaagacaccttggaacaaatagaggaacaattggacgtagcg
ctttccaaaatatgcaagaattttgatatcaatcattatacaaaggttcagcaggcttac
aggctgcttggaaaaacacagacagcaatggaccagttacatatgcacttcacccaagcc
attcacaacaccgtgtttcaagtagtccttggatatgtggagctctgtgcaggaaacaca
gacaccaagtttcagaagttacagtacaaagacctctgtacacatattacatcagacagc
tacattccatgccttgctgatctctgcaaagccctctgggaagtcatgctcagttactac
cgaaccatgcagtggcatgagaaccatgaccaggatgaggcagcagttgtgtcttctgtt
tcagatggcaacaatgtggttggagctgaagagaacagttttgaccgcaattatgtaaaa
aagaaattggagcatgggctttcacgaatatggcaggatgttcaattgaaagtgaaaaca
tatcttctgggaacagatctgtctaacttcaaatacgatgacttcatatttgtacttgat
gttatcagcaggctgatgcaggttggagaagaattttgtggcagtaagtctgaagttttg
caagaatctatcagaaggcaaagcgttaactatttcaaaacataccacagaacccgtctt
gaagaactaagaatgtttttggagaatgagacctgggaactttgtcctgtaaaatcaagc
tttagtattttgcagcttcatgagtttaagttcatggagcagtcgcgttccccgtccgtg
tcaccgagtaagcagcctgcctcagcagtttcatcgacggtgacgctgtttgagcagtac
tgtaacggaggaaaccccttcgaaattcaggctgacagcaaagatgacgagacagaagat
gtgttagcatccaatgggtatgaatcagatgaacaagaaaaaagtgcatatcaagagtat
gatagtgacagtgatgttcctgaagagttgaaaagagattatgtggatgagcagacagga
gatgccccaataaaaagtgtttctcgagaaactctgaagagcagaaagagatcagattat
aacctcaataaagtgaatgcacctattctaaccaacactacactgaatgtaataaggctt
gttggtaaatacatgcagatgatgaatattctgaaacctattgcatttgatgtgatccac
ttcatgtcccagctctttgattactatctgtatgcagtctatacattttttggccgaaat
gacatgtttgaatcaacaggattggggctcagtagcagcagattacggaccacactgaac
agaatccaggagagtctgattgatctggaagtgtctgctgatccttcgggaactctcaca
gctgctgaagagagaaaagagaaggtgccaagcccacatctcagtcatcttgtagttttg
acatctggcaattctctgtatggtttggcagagagagtggtggccacagaatccctggta
tttctggctgagcagtttgaatttcttcagcctcatcttgatgcagtgatgccagctgcc
aagaagccttttcttcaacagttctattctcagacagtgtcaactgccagtgagctacgt
aaaccagtttattggattgttgctgctaaagccattgattatgaacaaatgcttcttctc
atggcaaatgtgaaatgggatgtgaaggaaatcatgtcacagcacaacgtatatgtagat
gctcttttaaaggaatttgaagaatttaataggaggttgaatgatgtgtctaagagagtc
cgtattccattgccagtctccaacatcctttgggagcactgcatacgcttggccaacaga
actcttgtggaaggttatgccaacgtaaagaagtgcagcaatgaaggacgtgctttgatg
caacttgattttcaacagttcttaatgaaactagaaaagttaacagacattaggcctatt
ccagataaagaatttgtggagacctacattaaagcatactacctgacagaaaatgacatg
gaatgctggataaaagaacatagggaatactccactaagcagttgaccaatctggtgaat
atttgtctgggcacctacatcaacaaaaaggcaagacagaagctgttagctaccattgat
gacatagacaggcctaaaagataa
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