Sylvia atricapilla (blackcap): 136360245
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Entry
136360245 CDS
T10263
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
136360245 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sati03021
]
136360245 (POLR1A)
Enzymes [BR:
sati01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
136360245 (POLR1A)
Transcription machinery [BR:
sati03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
136360245 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
HMG_box
DUF7708
Motif
Other DBs
NCBI-GeneID:
136360245
NCBI-ProteinID:
XP_066173430
LinkDB
All DBs
Position
4:25875929..25905382
Genome browser
AA seq
1708 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPAVNGLYDLALGPPDS
KEVCATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLEKGLLHAVHDLEIILNRFVEQCADATGSEIEEELNRHVQEMLQSSQIRDRCSN
VKNVCDCRNKLISQFWKAHMGSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYHKSGEESI
LDETAGIDGSQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPHESSGFSPDLFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDAQVIRKLLVFMAKEQCQPIKITEEM
QTETGGDSEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLITEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPREKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAITDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPDNYAPLNLTGKAKIGGRAWVKGP
ARGCLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGGTSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKPEADHKRKKIIERSRQSGIEAVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNNYNNEVNKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIRPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALARMESHQANQQFKAIKKWRARHQNS
VQREGGFLLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKMWYELDEKKQRKYLKKTNKC
PDPSLGVWRPDTYFASVSETFENGVEGYINKWQSENSQSYMHPALSSDRLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTP
MMSVPVFNTKRALKKVKQLKKQLTRVCLAEVLHKVDIEESLHVKHKLNKHRLYKIKFHFL
PHEYYREEKCVKPRQILHFMETRFFKVLLEAIKRKTTKMASFNEVSSRKTTRKDLDDDQD
KALNSLEAVAEEEENIVDAEPDEGDGDATETKRRKNQEEEVDYESEEENGEENVKENAED
EEAESEKEEGTPGAEEDQSRAEGEDSQHLSFVSQSKKRKDQLLQSAEVRVSAVVESHPSI
QDYTFDIENELWCEVSLALPLTKVYFDLSSLLGSLAHSTVIHEVKGITRCLLNESTNKEG
EKESVLQTEGINLAELFRYSDILDLNRLYCNDIHAMAKNYGIESALRVIIKEIKDVFAVY
GIVVDPRHLSLVADYMCFEGIYKPLNRIGIQSNSSPLQQMTFETSYKFLKEATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcccaaagtggttccgtggcggcggctggttggggtgtccttcgggatgtac
acggccgaggagataaggaagctgagtgtgaaacccataacaaaccctcagtacctggat
aatgtggggaatccggctgtgaacggactgtatgacttggccttgggacctccagactcc
aaagaagtgtgtgcaacttgcatgcagaacttcagcaactgccccggacactttggccat
atagagctgcctctgactgtctacaatccccttttcttcgataaattataccttctaatc
cgaggatcttgtttgaattgccacatgctgacatgtcctcgagccgtggttcacttgctg
ctaagtcagctgaaggtgctggagaaaggcttgcttcatgctgtgcatgaccttgaaatc
attctgaacaggtttgtagagcaatgtgcagatgcaacaggctcagaaattgaagaagag
ttaaatcgccacgttcaggaaatgttacaaagctctcaaataagagatcggtgttcaaat
gtcaaaaatgtgtgtgactgtagaaataaactgatttcacagttctggaaagcgcacatg
ggttcaaagaaatgcccaaactgcaaatccaggagatcactggtgcgaaaggagcacaac
agcaagctgacagtaacctatccatctacagtgtaccataagtcaggagaggaaagcatt
ctagatgaaacagcaggtattgatggaagccagttagggaagagaggatacctgacacca
atgactgccaaggaatacatcctggctttgtggaagaacgaaggtttctttctgcgttat
ctcttccctgggatggatccccatgagagttcaggattcagtccagacttgtttttttta
gatctacttgtggttccaccttcaaggtatcgccctgtaaatcgcgttggagatcgcctg
ttcacaaacgggcagacggtgaacttgcaggcggtgatgaaagatgcccaagtgatacgg
aagctcttggttttcatggccaaagaacagtgtcagccaataaaaataacagaagaaatg
caaacagaaacaggaggggatagtgaacctctggaccgttctgtgctgacaacaattcca
ggacagagcattgcagataagctgtacaatgcttggattcgtctccagagccatgtcaac
attgtgtttgatagtgacatggacaagctgataacagaaaaataccctggtattcgtcag
ctgttggagaagaaggaagggctgttccgcaagcacatgatggggaagcgtgtggatttt
gctgctcgatccgtcatctgtcccgacatgtacattgggaccaacgagattggcatccct
atggtatttgccaccaaactgacttaccctcagccagtcactccctggaatgtcaaagag
ctgaggcaggctgtcatcaatggccccaaggtgcacccaggggcctccatggtcattaac
gaggacgggtctcgcacggtgctgagcgccaccagcctgacccagcgcgaggccatcgcc
aagcagctcctcaccccctcctcaggggcaccccagacaggcctgaagattgtgtgtcgg
cacattaagaacggggatgtgctgctgctgaaccgccagcccacgctgcacagaccttcc
atccaagcccaccgggcacggatcctgcccagggagaaggtgctgaggctccactacgcc
aactgcaaggcttacaacgccgacttcgacggcgatgaaatgaatgcccacttccctcag
agcgagctgggcagagcagaagcctacaccttagccatcactgatgagcagtacctggtg
ccaaaggatgggaagccacttcctggcttgatccaggatcacatgatttctggagtcagc
atgacgatccggggctgctttttcaccagagagcagtacatggagcttgtgtaccgaggg
ctgacagacaaaaaaggaagaattaaaacctttcctcctgccattatgaagccacagcga
ttatggacaggaaagcaggttgtttccacattgttaataaacatcattccagacaactat
gctccactgaatttgactgggaaagcaaaaattggtgggagagcctgggtaaagggacct
gcaagaggatgtctgaatcttgattcaatgtgtgaatctcaggttattatcagagatggg
gaattactgtgtggagtcttggacaaagctcactttggcagctctgcctatgggctggtg
cactgctgctatgagatctatggcggtggaaccagtgggaaggtgctgacgtgcctgggg
cgcctcttcactgcttacctgcagctgtacaggggatttaccatggggattgaagatatt
ttggttaaacctgaagcagatcacaaaagaaaaaaaatcattgaaaggtcaagacagagt
ggtatcgaagctgttagagctgctcttaatttgccagaaacagcgtcatgtgaggaggtc
caagggaagtggcaggatgcccatctctgcaaagaccagagggattttaacatggttgat
atgaagttcaaggaggaagtaaacaattacaacaatgaagtcaacaaggtttgcatgccc
cttggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcaggagcc
aaaggatccactgtaaacacaatgcagatttcttgtttgctgggccagattgagctggaa
ggccgaagacccccactgatggcatctggcaaatcactgccatgtttccagccttatgat
ttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcaggccttct
gaattcttctttcactgcatggctggcagagaaggtcttgtggatacagctgttaaaacc
agccgttctgggtacctgcaaaggtgtatcataaaacatttggaaggactggtagttcag
tatgacctgactgtacgagacagtgatggcagcgtggtgcagtttctgtatggagaagat
gggcttgatatccctaaaactcagttcttgcaacctgagcagtttcctttcattgcagaa
aactatgaggtaatccagaagacaaaccatctggatgaagctttagcaaggatggagtct
caccaagctaaccagcagttcaaagccatcaagaagtggcgagccagacaccaaaactct
gtgcaaagagaaggaggctttctgttgttttcccaaaagaaattggcaagtttgaaagca
cagcttccaggaggtgaaataaagaatggaagagatcctgctactttacagttgttgaag
atgtggtatgagcttgatgagaagaaacaaaggaaatatctgaagaaaacaaataagtgt
cctgacccaagccttggggtttggcgcccagatacttactttgcatctgtttcagaaaca
tttgaaaatggagttgaaggctatatcaataaatggcaatctgagaacagccagagttac
atgcacccagcactttcttctgatagattaaaggatctgttgtatttaaagtggcagcgt
tctctttgtgacccaggagaagctgtggggcttcttgctgctcagagtattggggaacct
tcaacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcaca
ttgggtattccaaggttgcgggaaatactgatggtggccagctcaaacattaaaacaccg
atgatgagtgttcctgtgttcaataccaagagagctctcaaaaaggtgaagcagcttaag
aaacagctcacaagagtgtgcttagctgaggtcttgcacaaagtggacattgaggaatcc
ctgcatgtgaaacacaagctgaacaagcatcgcctctacaaaatcaaattccatttcttg
ccccatgaatattaccgagaggagaagtgtgtgaaacccaggcagatcttgcacttcatg
gaaacaaggttctttaaagttcttctggaagcaattaaaaggaagactacaaagatggca
tcttttaatgaagtcagcagtcgaaagacaactcggaaggatttagatgatgaccaagat
aaggcactgaatagtctggaagctgtagcagaggaagaagagaacattgttgatgcagaa
cctgatgaaggggatggtgatgctaccgaaacaaaacggaggaagaaccaagaagaagag
gttgattatgagagcgaagaagagaatggggaagaaaatgttaaagagaatgcggaagat
gaagaggctgaatctgaaaaagaagaagggactcctggtgctgaagaggatcagagcaga
gcagagggtgaagattctcagcatctgtcctttgtgtctcagagtaaaaaaaggaaagat
cagttgcttcagtcagcagaggtgcgagtgagtgctgttgtggagagccacccatccata
caggattacacatttgacatcgaaaatgagctttggtgtgaggtttccttggcattgcca
ctgaccaaggtgtactttgacctctcctccctgctggggtccctggcgcacagcacagtg
atccacgaggtgaagggcatcacacgctgcctgctgaatgagagcaccaacaaggaggga
gagaaggaatccgttctccagacagaagggataaacctggcagagctcttcagatactct
gatattttggacctgaacagactttattgcaatgatatccatgccatggctaagaattat
ggaattgaatctgccctgagagtgattataaaggaaataaaagatgtatttgctgtatat
ggaattgtggtagatcctcgacacctttcgcttgtggcagattacatgtgttttgaaggg
atttataaaccactgaatcgcattggaattcagtccaactcctcccctctgcaacagatg
acatttgaaaccagctacaaattcttgaaggaagcaacgatgatgggtgcccatgacgag
ctgcgatccccttcggcctgcctggtggttggaaaagttgtcaaaggagggactggcctg
tttgacctcaagcagcccctgacatag
DBGET
integrated database retrieval system
