Sylvia atricapilla (blackcap): 136360286
Help
Entry
136360286 CDS
T10263
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136360286 (HTT)
04131 Membrane trafficking [BR:
sati04131
]
136360286 (HTT)
03029 Mitochondrial biogenesis [BR:
sati03029
]
136360286 (HTT)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
136360286 (HTT)
Membrane trafficking [BR:
sati04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
136360286 (HTT)
Mitochondrial biogenesis [BR:
sati03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
136360286 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
DUF7692
Motif
Other DBs
NCBI-GeneID:
136360286
NCBI-ProteinID:
XP_066173519
LinkDB
All DBs
Position
4:29258934..29340466
Genome browser
AA seq
3079 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPAALPEEPLQRPKKELSATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
VQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASR
SRSGSIVELIGKVLLGEEEGLDDDSETRSDVSTASFSASVKGEITSELASSSGVSTAGSV
GGSAADATGHDIITEQPRSQHTLQSDSVDLASCDLTSTATEGEDDEVLSRSSSQISAVQS
DATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGAEGQYSGMQIGQLQDEE
DEAANILQDDSSESFRNSSLALQQSQLLKTMSHSRQPSDSSVDRFTSKEDAADAGDHENK
PSRVKGDIGHYTDRDCAPLVHCVRLLSGSFLLTGDKGALVPDRDVRVSVKALAVSCVGAA
VALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIRGATAILCGTIVNSILI
KSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKLACTAVRHCIMSLCSSS
YSELGLQLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEGKTESLHRGVHHYTGLL
KLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQGQADPVVAVARDQSSVY
LKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRVIAAISHALTISTTRAL
TFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDDAQRGCTIGMAGLVLSLLSSAWFPL
DLSAHQDALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEPWPALADRALVTLVEQL
FSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKGKERESAEQASVPMSPK
KSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKATHANYKVTLDLQNTNE
KFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQLLKTLFG
TNLASQYDGLSSNPNKAQGKAQRLGSSNLRPGLYHYCFMAPYTHFTQALADASLRNMVQA
EQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLFEPLVIKALKQYTTTTS
VQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFL
VLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAG
KELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQ
QMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMASVSTVQLWISGILAILR
VLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNVPTPEDRTEVKQVKYPPEETF
SRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAAT
RLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVNYTNYNWWSEVHQTPKR
HSLSTTKLLSPHVSGDSDESDLESKRGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLI
VNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLAAPTTLKKTLQCLEGI
HLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQNSIAQLPVEELDRIQ
EYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDGEDQPALEKVVLDKDWY
VSLVRSQCYIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSLLAPCLSLGMNEISRDQ
KSSFFETARRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKKLNDIFGDEVMYQSMMT
LCRALAQYLLLLSKLPAGLRVPPDKEDDILKFVVMSVEALSWHLVHDQIPLSVDLQAGLD
CCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGNQLLSPERKNTSKPLSE
GEIDSNVQKTKHIIAACETVAEMVECLQTVLSLGHKRNSSIPAFLTPVLKNIIISLARLP
LVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIFKEFIYRINTLGWISRTQ
FEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAITSLVLSAMTIPVAGNPA
VSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIATHHLYQAWDPVPSL
SPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNNITPLREEEWGEDEEDE
NDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSNPSKRTPVILISEVVRS
LLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATCKAAAVLGMDKAVAEPV
SRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIISEYLLSNLRGVAHCVNI
HNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSDESTPSIIYHCVLRGLE
RLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKISPSRISDANP
GAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDFFPPQDVMNKVIGEFLS
NQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSA
STSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEELDRRAFQSVFEVVASPG
TPYHRLLTCLQNVHKVTAC
NT seq
9240 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag
cagggcccggctgccctccccgaggagccgctgcagagaccaaagaaagaactttcagct
accaagaaggatcgagtgaatcattgtctaacaatatgtgaaaatatagttgctcagtca
ctaagaaattccccagaatttcagaaactgctgggcattgctatggaactcttcctcctc
tgcagtgaggatgctgaatctgatgtccggatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttacagttggaactgtataaagagatt
aaaaagaatggtgcttcaagaagtctgcgtgctgcgctctggagatttgctgagcttgcc
catctagttcggcctcaaaagtgcaggccatacttagtgaaccttttgccctgcctgaca
cggataagtaagagacccgaagaatcggtccaggagacgctggctgcggcaatacccaaa
atcatggcagcctttggcaattttgcaaatgacaatgagattaaggttttgttgaaggct
ttcatagctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagca
gtaagcatctgtcaacattcacgaaggacacagtatttttatgcctggttattgaatgtg
cttttaggcttattggttcctgtagaagatgatcgtcctactcttttaattctgggtgtt
ttacttacactacggtatctcatacctttattgcaacaacaagtaaaagataccagcctc
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt
gtacaggtttatgaactgactctgcactatacccagcatcaggaccataatgttgtgacc
ggagctttagaattgctccagcagctctttagaacacccccacctgagctgctgcatgct
ctgactgcctgtgggggcattgctcaggtcagtgtatccaaagatgaacctgccagcagg
agccgcagtggaagcatagtggaactcataggtaaagtacttcttggtgaagaagaaggc
ttggatgatgattctgaaacccgatctgatgtcagcactgcatcgttttcagcttctgtc
aagggcgagataaccagtgaactggcttcttcatcaggtgtgtcgacagctggctcagtg
gggggctcggctgccgatgccacgggacacgacatcatcacggagcagccccgttcccag
cacacgctgcagtcagactctgtggacctggcaagctgtgatctgacaagtacagccact
gaaggggaagacgatgaagtgctcagtcgaagctccagccagatcagtgctgtccagtca
gatgccactatggatttgaatgatggcacacaggcttcctcaccaattagtgatagctct
cagactactacagaaggtccagactctgctgtaaccccttcggacagttctgaaattgtt
ttggagggtgctgaaggacagtattctggaatgcaaattgggcagctacaggatgaggaa
gatgaagctgcaaatattctccaagatgattcatcagagtccttcagaaattcttctctt
gctcttcagcagtctcaactgctgaaaaccatgagccatagcaggcagccctctgacagc
agcgtggatcgatttacatcaaaagaagatgcagcagacgctggtgatcatgagaacaag
ccttccagagtgaagggggacattgggcactacactgacagagactgtgctccattggtg
cattgcgttaggctactgtcgggttccttcctgctcactggggacaaaggagctttagtt
cctgatagagatgtgagagtcagtgtaaaagccttggcagtaagctgtgttggagcagct
gttgcacttcaccctgagtctttcttcagcaaactgtataaaacacctctggaggcaatg
ggagaagagtatgaggagcagtatgtatcggacattctgaactatattgaccatggagat
ccccagattagaggagctactgccattctctgtggaacaattgtcaactccattcttatt
aaatcccgctttgatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctc
ttttccttgatagactgcatacctctgttacagaaaacattgaaagatgagtcctctgtt
acatgcaaactggcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagt
tacagtgaactaggtttgcagctgattgttgacctccttgctctgaagaacagctcatat
tggctcgtaaggacagaacttctggaaactcttgcagaggtagattttcggctagtcaac
ttcttggaaggaaaaactgagagtttacacagaggtgttcatcattatactggtctgtta
aagcttcaggagagagtacttgaaaatgttgtaataagtctgcttggagatgaagatcca
agagtgagacatgtggctgcagcttcattaatgaggcttgttccaaagctgttttataac
tgtgatcaaggacaggctgacccagttgtggcagtagcaagagaccaaagcagtgtctac
ctgaaactcctcatgcatgaaacacagcccccatctcactttgcagtgagcactatcacc
agaacgtacagaggttacaatatgctgcaaagtccaacagatgtcactatggaaaacaac
ctttcaagggttattgcagcaatttcccatgcattgacaatatccactacaagagcactt
acatttggctgctgtgaagctttgtgtcttctgtccacaacatttccagtctgcacctgg
agtgtgggatggcactgtggtgtttcccagccaagttcttcagatgacgctcagaggggc
tgcaccattggtatggctggcttggtcctgtcactactttcatcagcatggttcccactg
gacctctcagcgcatcaagatgctttgattttgactggaaacttgcttgcagcaagtgct
cccaagtgcttaaagaatccctggagtgctgaagaagatgcaaaccaaggtgctgcaaag
caggaggaaccctggccagctctggcagatcgagctcttgtcactctggtagaacagctc
ttttctcatctgctgaaggtcattaatatttgtgcgcatgtgatggatgatgttgctcct
ggtccagcagtaaaggcagcattaccttctctcacaaacccaccttctcttagtccgatt
cggagaaaggggaaagagagggagtctgcggaacaggcatctgtgccaatgagccctaag
aagagtggagaagcaagtccagcttctaggcaaactgatgctacaggacctgttccaaca
agtaaatcatcttcagtaggaagcttttatcatcttccatcatatctgaagttatatgat
gtcttgaaagcaacccatgctaattataaggttactttagatctccagaacactaatgag
aagtttggatgtttcttacggtctgccttagatgttctctctcaaatcttggaacttgct
actcttcaggacattggaaagtgtgtggaagaaattttgggatatctaaaatcgtgtttc
aacagagagccaacaatggcaacagtgtgtgtgcagcagttgttgaaaacactgtttggg
accaatctggcttctcagtacgatggcttgtcctcaaaccccaacaaagctcaaggcaaa
gctcaacgcttgggttcctccaatctgaggcctggtctctaccactattgcttcatggca
ccctacacacacttcacacaggcccttgctgatgccagtctaaggaacatggttcaggct
gagcaggagcacgatgcttcaggatggtttgatgtgctgcagaaagtttcaacacagctg
aaaactagcatttccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcac
attcgtttatttgaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcg
gtacagctgcagagacaagttctagacttgcttgctcaactggttcagctgcgagttaac
tactgtcttctggattcagatcaggtgtttattggatttgtgctaaagcagtttgaatac
attgaagtaggacagttcagggagtctgaagcaattattcctaatatcttctttttcctg
gtgttgctgtcttacgagcgatatcattccaaacaaataattggaattcccaagattatt
cagctgtgtgatggtatcatggccagtgggaggaaagctgttacacatgcaataccagcg
ctgcaacccattgttcatgatctgtttgtgttaagaggaacaaataaagctgatgctggc
aaagagctggaaactcaaaaggaggttgtagtgtcaatgctgctgagacttatccagtac
catcaggtgctagaaatgttcatcttggtattgcaacagtgtcataaagaaaatgaagac
aaatggaaaagattgtctcggcaaatagctgacatcattctcccaatgcttgcaaaacaa
cagatgcatatagactctcatgatgctttgggagtattgaacacgttgtttgaaattttg
gccccttcatcccttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaa
acaatggcatcagtgagcactgtccagctgtggatttctggaattttagctatccttaga
gttctgatttcacagtcaacagaagacatcgttctatcccgtatacaagagctttccttc
tcaccatatttgatttcatgtcaagcaatcaacagactgagatgtggagaaaataacgtg
cccacaccagaggatcgcactgaggtcaaacaggtgaaatacccacctgaagagacattt
tccagattcttactacagctcgttggcattctactggaagatattgttaccaagcagtta
aaagtggacatgaacgagcagcagcatactttctactgccaggagctgggcacactgctt
atgtgcttaatacatatcttcaaatcagggatgtttagaagaatcacagctgcagccacc
agactttttacaggagatggttctgatggtagtttctatacacttgaaagtctgagtgac
cttgttcagtccatgattcccactcatccttctttagttctcctgtggtgtcacatcttg
cttcttgtcaattataccaactacaactggtggtcagaagtgcatcaaaccccaaagcga
cacagcctttctactactaaactgcttagccctcatgtatctggagacagtgatgaatct
gacttggaatctaagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcatt
ctcttttgtgactacgtttgtcaaaacctacatgattcagaacacctgacctggcttatt
gtgaatcatgttcaagacttgattaatctgtcccatgagcctccagtacaagattttatc
agcgctgttcacaggaattctgcagccagtggtctcttcatccaggccattcagtcacgg
tgtgagaatcttgcagctcccacaaccctgaagaagaccttgcagtgcttggagggaatc
cacctgagccagtccggggctgtgctgaccctgtacgtggacaagctgctgtgcactccc
ttccgagtgctggctcgcatggtggacaccctggcctgccgccgggtggaaatgctgctg
gcagcaactctgcagaacagcattgctcagttaccagttgaagaactggacagaatccag
gagtaccttcaaaacagtggattagcagcaagacaccaaagactctactcactcttggat
aggtttcgtcttatggtagcaccagacacaaccagtccttcacctctggttacctcacac
ccactagatggggaagaccaaccagctttagagaaagttgttctagacaaagactggtat
gtgtcactagtgcggtcccagtgctacatcaagtctgactcagcgctgctagaaggagca
gagctggtaaataggattcctcagcctgacctaaactccttcatgaccagcaaggaattc
aacctaagcttgttagcaccttgtttaagccttggcatgaatgagatctcaagagaccag
aagagcagcttctttgaaacagctcggagggtaactctggatcatgtgtcctctgctgta
caaaaccttccagccaaccaccaggtttttcaaccactattgccaactgagccatcagcc
tactggaaaaaactaaacgatatctttggagatgaggtgatgtatcagtctatgatgaca
ctttgtcgtgcactggctcagtatttgttgttactgtcaaaactaccagctggtctccgt
gttcctcctgacaaagaggatgatatcctgaaattcgtagtgatgtcagtagaggcacta
tcatggcatttagtgcatgaccagattccattaagtgtagatcttcaagctggtctggat
tgttgctgtctgacactacagcagcctagtctctggaatttgctgtcctctgcagctcat
gtgacatatgcttgctccttaattaactgcattagatttatcatagaagcagttgctgtg
gaacctggtaatcaacttctgagtcctgaaagaaagaatacttcaaaacctttaagtgag
ggagaaattgattcaaatgtacagaaaacaaaacacattattgcagcatgtgaaacagta
gctgagatggtggaatgcttacagactgtcttgtcactggggcacaaaagaaacagcagc
atccctgcatttctcactcctgtcctgaagaacatcatcatcagtttagcaaggctgcct
ctagtgaacagctacaccagagtacctcccttggtctggaaattaggctggtcaccaaag
cctttaggtgactttggcacagtttttcctgaaatcccagtagaatttctacaagaaaag
gaaatctttaaggagttcatctatcgcattaatacacttggatggatcagccgtactcag
tttgaggagacttgggctactttgcttggtgtgctcgtaactcagcccattgtaatggac
caagaggagaaccaacaggaggaagatacagagaggacccaaatcaatgttcttgcagtt
caagccataacctccctggtgctgagtgcaatgaccatacctgttgcaggcaatcctgca
gttagctgtttggagcagcagccccgcaacaaagctttaaaagctctggacacaaggttt
ggaaggaagctaagtgttatcaggggaattgttgaacaggaaatccaggcaatggtatct
aagagagataatattgctactcatcacttataccaagcttgggaccctgttccatcactt
tctcctgctactacaggtgctcttatcagccatgaaaaactcttactgcagatcaatact
gaacgagaaataggagatatggattataaattgggacaggtctctatacactccatatgg
ttaggaaataacatcactccactgagagaagaagagtggggtgaggatgaagaagatgag
aatgatgtacctgctccttcctcaccaccaacctctcctatcaacaccaggaagcaccgg
gctggtgtagatatccattcttgttctcagttcttgcttgaactgtacagtcagtggata
ttgccatccaaccccagcaagagaaccccagtcattttgatcagtgaagtggtgcgatca
cttctggcagtgtcagacttatttacagaaaggaatcagtttgagatgatgtacacaaca
ctgacagagctgcggaaggtgcatccatcagaagatgagattcttgtacagtatttgata
ccagctacttgtaaagctgctgctgttcttggaatggataaagctgtggctgaaccagta
agtcggcttctggaatcaaccctaagaagcactcacatgccaagtcggattggagctctg
catggaattctttatatccttgagtgtgacttgctcgacgagacagcaaagcaactcatt
ccaattatcagcgagtatctgctctccaatttgagaggagtagcacattgtgtgaatatc
cataaccaagagcacattttggtaatgtgtgcagctgctttctatttgattgagaattac
ccacttgatgtagggcctgaattctctgcaggaattatacagatgtgtggagtcatggtg
tctggaagtgatgaatcaacaccatccattatttatcactgtgtcctgagaggattggaa
cgacttctgctttcagagcagctttcaaggctggacagcgagtcactggttaaactgagt
gttgacagggtgaatgtgcagagcccccacagagcaatggcagcccttggattaatgctg
acttgcatgtacacaggaaaggaaaaaatcagtcccagccgtatctcagatgcaaatcct
ggtgctcctgacagtgaatctgtgattgttgctatggaacgagtatctgtcctttttgat
aggatcaggaaaggatttccgtttgaagctcgagtagtggctcggattcttccacagttc
cttgatgatttcttccccccacaagatgtaatgaacaaagtcattggggaatttctgtcc
aatcaacagccatacccacaattcatggcaacagtagtttataaggtgttccagacactg
catagcaccggacaatcctcaatggtccgtgactgggtgatgctctctctgtctaatttc
acacaaaggacacctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgct
tccaccagtcagtggatttcagcaattcttccacatattatcagcagaatgggaaaatca
gagcaagtggatgttaacatcttttgtttggtggccatagacttctaccgacaccagatc
gatgaagaattggatcggagagccttccagtcggtgtttgaggtggtagcatctccagga
accccataccatcgcctgctcacttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
