Sylvia atricapilla (blackcap): 136360344
Help
Entry
136360344 CDS
T10263
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati04140
Autophagy - animal
sati04148
Efferocytosis
sati05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
136360344 (VPS16)
04148 Efferocytosis
136360344 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
136360344 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sati04131
]
136360344 (VPS16)
Membrane trafficking [BR:
sati04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
136360344 (VPS16)
Hops complex
136360344 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
136360344
NCBI-ProteinID:
XP_066173617
LinkDB
All DBs
Position
4:complement(31820656..31836383)
Genome browser
AA seq
837 aa
AA seq
DB search
MDCYTANWNPLGEETFYRKLELYSMEWGLREDLHDCVVAAAPYGGPIALLRNSRRDKTPS
ARPLLEIYSASGLLLASVPWKSGRLVHLGWTAGEDLLCIQEDGTVLVYNLFCEFKRHFSM
GNEVLQNHVLEAQVFHTEFGTGVAILTGALRFSLATNIDDLKLRRLPEVPGLQKPPPCWA
VLSQDRVTVVLLAVGQELFLLDNTSCSVVSPPGLSPSAGLFLHMAVSFTHRHLALFCDSG
TVWMGTASLKEKFCEFNTGIRSPPKQMVWCTRPRSRQRAVVLAWERQLMVVGNSSECIRF
VLDEDSHLVPELDGVRILSRSSHEFLHEIPEASQEIFRIASMAPGALLLEAQKEYEKESQ
KADEYLREIREQQLLPEAVGQCIEAAGYEHEPDTQKSLLRAASFGKCFLDKFPPEGFVRM
CQDLRVLNAIRDYQIGIPLTFTQYKQLTIEVLLDRLVLRRLYPLAIRICEFLRLPEIQGV
SRILAHWACYKVQQKDKSDEEVAQAINQKLGDTAGISYSDIATRAYDCGRAELAIRLLEY
EPRSGEQVPLLLKMKRSKLALGKAIESGDTDLVYTVVLHLKNELNRGTFFMTLQNQPVAL
SLYRQFCRHQERETLKDLYNQDDNHQELGNLHVHSGYSEKRIEGRVAALQSALDEFYKAK
NDFAAKATEEQIKLLRLQRHLQEELDKPYLDLSLHDTVATLILDGHHKRAEQLYRDFRIP
DKRYWWLKINALATRGDWEEMEKFSKSKKSPIGYLPFVEVAVKHHNRYEARKYAPRVPPE
QRVKAFVLVGDLEQAAEAAIERKNEAEMSLVLSRCSAGTDSAVAEKLNRARAQLLKK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggattgttacacggccaactggaacccgctaggcgaggagaccttctaccggaagctg
gagctctactccatggaatggggccttcgagaggacctccatgactgtgtggtggcagct
gccccctatgggggtcccatagccctgctgaggaattcccggcgggacaagacccccagt
gcccgcccgctcctggagatctactcggcctcagggctgctcctggccagtgtcccgtgg
aagagcggccgcctggtgcacctgggctggacagcgggggaggacctgctgtgcatccag
gaggatgggacagtcctggtctacaacctgttctgcgagttcaagcggcacttcagcatg
ggaaacgaggtgctgcagaaccacgtactggaggcacaggttttccacacggagttcggc
acgggcgtggccatcctgacgggggcgctgcgcttctcgctggccaccaacatcgacgac
ctcaagctgcgccgcctgcccgaggtccctgggctgcagaagccaccgccgtgctgggcc
gtgctgtcccaggacagagtgaccgtggtgctgctggccgtgggacaggagctcttcctg
ctggacaacacctcctgctccgtggtgagcccccccgggctgagcccctcggcggggctg
ttcctgcacatggccgtgtccttcacccaccggcacctcgcgctcttctgtgactccggc
accgtctggatgggcacagcctcgctcaaggaaaaattctgcgagttcaacactggcatc
cgctcccctcccaagcagatggtttggtgcacgcggccccggagccggcagcgggccgtg
gtgctggcctgggagcggcagctgatggtggtgggcaattcctcggagtgcatccgcttt
gtcctggatgaggattcccatctggtgcccgagctagacggggtccggatcctgtcccgt
tcctcccacgagttcctgcatgagatcccagaagccagccaggagattttccgcatcgcc
tccatggctccgggcgctctgctgctggaggcacagaaggaatacgagaaggagagccag
aaagccgacgagtacctgcgggagatccgggagcagcagctgctccccgaggctgtgggc
cagtgcatcgaggccgcgggctacgagcacgagcccgacacccagaaatccctgctgagg
gcagcttcctttgggaagtgtttcctggataagttccccccggaggggtttgtgcgcatg
tgccaggacctgcgggtgctcaacgccatccgggactaccagatcgggatcccgctcacc
ttcacccaatacaaacagctcaccatcgaagtgctgctggacaggctggtgctgcgccgc
ctgtaccccttggccatccgcatctgcgagttcctgcggctgccggagatccagggcgta
agccgcatcctggcacactgggcctgctacaaggtgcagcagaaggacaagtcagacgag
gaggtggcccaggccatcaaccagaagcttggggacaccgcgggcatctcgtactcggac
atcgccacccgcgcctacgactgcggccgcgccgagctggccatcaggctgctggagtac
gagccgcgctccggcgagcaggtgccgctgctgctgaagatgaagcgcagcaaactggcc
ctgggcaaagccatcgagagcggggacaccgatctggtgtacacggtggtgctgcacctc
aagaacgagctgaaccgcggcactttcttcatgaccctgcagaaccagcccgtggccctc
agcctgtaccgccagttctgccggcaccaggagcgggagacgctgaaggatttgtacaac
caggacgacaaccaccaggagctgggcaacctccatgtgcactcaggctactcagagaag
cggatcgaggggcgtgtggctgccctgcagagcgccctggatgagttctacaaggccaag
aacgacttcgctgccaaggccacggaggagcagatcaagctgctgcggctgcagcggcac
ctgcaggaggagctggacaagccctacctggacctgtccctgcacgacacggtggccacg
ctcatcctggacgggcaccacaaacgcgctgagcagctctacagggacttcaggatcccg
gacaagaggtactggtggctgaagatcaatgccctggccactcgtggggactgggaggag
atggagaagttctccaagagcaagaagtcacccatcgggtacctgcccttcgtggaggtg
gcggtgaagcaccacaaccgttacgaggccaggaagtacgcgccgcgtgtgccgcccgag
cagcgcgtcaaggccttcgtcctcgtgggggacctggagcaggcggccgaggcggccatc
gagcgcaagaacgaggccgagatgagcctggtgctgtcgcggtgctcggccggcaccgac
agcgccgtggccgagaaactcaacagggcccgggcacagctgctcaaaaagtga
DBGET
integrated database retrieval system
