Sylvia atricapilla (blackcap): 136361118
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Entry
136361118 CDS
T10263
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03013
Nucleocytoplasmic transport
sati03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136361118 (UPF2)
03015 mRNA surveillance pathway
136361118 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136361118 (UPF2)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136361118 (UPF2)
mRNA cycle factors
P-body specific factors
136361118 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
136361118
NCBI-ProteinID:
XP_066174918
LinkDB
All DBs
Position
5:17767111..17820726
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AA seq
1271 aa
AA seq
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MPAERKKPANMEEKEPQLNNKEKEFSERRPVSSREKPKEDVKVGMKRETLKVPEDKKKKM
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKYSQNKDSSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVADDLCSTLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaaatatggaagaaaaagaacctcagttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcagcagggagaagccaaaagaagat
gtgaaggttggcatgaaaagagagactttaaaggttcctgaagataaaaagaaaaaaatg
gaagaggataaaagaaagaaggaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaaacaagaggaggaagagaaaaagaaacaagaagaagaagctgctcaactg
aaggagaaagaggaagcacatcagctccatcaggaggcctgggagcgccatcaggcacgg
aaagagctccgcagcaaaaaccagaacgcgccggagagtcgtcccgaggaaaacttcttc
agcagactggactccagcctgaagaagaacacggcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaggccaaactgaaaatatcagacgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgatacgctgattttgctccttcattactt
caggcttggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattaccaag
ttaagaactgatctgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattataaacgccgatcgagaatcc
cacactcatgtgtctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ctggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacagcagcccttccagaatttattgaaagaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgagagacaaaac
agacgcattctccactccaaaggagagctgagtgaagatcgccacaagcaatatgaggaa
tttgcaatgtcgtatcagaagctgttggcaaattctcagtcgctggctgatcttttggat
gagaacatgcctgacctcccccaagagaaaccaacacctgaggaacatggacctggtatt
gatattttcacaccaggaaagcctggagagtatgaccttgaggggggtatctgggaagat
gaagatgccagaaacttctatgagaatctcattgacttgaaggcttttgtgcctgcaatt
ttgtttaaagataatgaaaaatattcccagaacaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggag
ctggagaacctggatattaatgatgatgcactggagttggactgtggagatgaggcagaa
gatcttacaaagaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaactcattgtagatgcttttcttcagcagcttccaaactgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagccaacaga
agaaaactggtacgagcacttttcatagttcctagacaaagattggatttgctaccattt
tatgcaagactggttgccacattgcatccctgcatgtctgatgtagcagacgatctctgt
tccacgctgaaaggggatttcaggttccatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aatgatactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcctgtaccttgctggaaacctgtggaagattcctcttcagatcaccagaatctcac
ttaagaaccagcgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatatccgtaagcttctttacaag
gatctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtt
ggaattcatgttgtggatggagtgctagaggatatccgactaggaatggaggttaatcaa
ccaaaattcaaccaacggcggatcagcagtgccaagtttctgggggagctttacaattac
cgaatggtggagtcagctgtaatatttagaactctgtactccttcacctcgtttggtgtg
aaccctgatggcagtcctagtccactggaccctccagagcatcttttcagaatcagactc
gtctgtactatcctcgatacctgtgggcagtattttgacagaggatccagcaagcgaaaa
cttgattgcttccttgtatattttcagcgctatgtgtggtggaaaaaaagtctggatgtt
tggacaaaagaccacccttttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaagtgcaa
gacttggaacgagaattcttaataaaactgggaattgtgaatgacaaagattccaaggac
tccattacggaaggagagaatctggaagaggatgaagaagaggaggaaggtggagcagag
acagaggaacaatctgggaatgaaagtgaagtaaatgagccagaagaagaggagggctct
gacaatgaggaagaagagggtgaagaagaggaggaggaaaacaccgattatcttacagac
tccaataaggaaaatgaaaccgacgaggagaatacagaagtaatgattaaaggaggagga
ctgaagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaggtgcatcagctggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggtcccccacttggaggtggggaagga
gagtcagagtcgggggacacaatgccatttgtcatgttaacacgaaaaggcaacaaacag
cagtttaagatcctgaatgtaccgatgtcttcccaacttgctgcaaaccattggaaccaa
cagcaagcagaacaggaggagaggatgaggatgaaaaagctcactttggatatcaatgaa
aggcaggaacaagaggactatcaggaaatgttgcagtctctggcacagcgtccagctcca
gcaaatactaatcgtgagcggcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaaccggtgggaggagacgctga
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