Sylvia atricapilla (blackcap): 136361258
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Entry
136361258 CDS
T10263
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
sati Sylvia atricapilla (blackcap)
Brite
Enzymes [BR:
sati01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136361258 (PDZRN4)
Ubiquitin system [BR:
sati04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
136361258 (PDZRN4)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136361258
NCBI-ProteinID:
XP_066175135
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All DBs
Position
5:28215108..28451124
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AA seq
1028 aa
AA seq
DB search
MGFDPSRFAGPVAAELQCGLCGRVLEEPLSTPCGHVFCAGCLLPWAARRRRCPLRCRPLA
AAELRPVLPLRSLVQKLEVKCDYSPRGCGRTVRLRELPAHLAACRYGPPGPAEPQPRARH
PSGSAAGRPRAGGGHRSLRALRGGGAPEPGHELKREALRWSRREKSLLAQLSALQSEVQL
TARRYQAKFGQYMSHISSIARDLAGSQPGKGGQRKPLMIMLHRENDTLGFNIIGGRPNQN
NQEESAEGIYVSKILENGPADKAEGLQIHDKIIEVNGKDLSKATHEEAVEAFRNAKEPIV
VQVLRRAPATKTHSSSQDVRLMDASTQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSC
HSLHPVEHEFYEGNEYLSSLPADADRAEDFEYEEVELCRIGSQEKLGLTVCYRTDDEEDT
GIYVSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSEECRKIVLLVARPEM
QLEEGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEEDGTTDTATSSSNN
HEKDSGVGPTDESLRNDESSEQENATEEQNRATLQSKRDLGHSQDTLGSVELQCNESFVS
GEYIESDFIGHPEEECERFRQLLELKCKIRNHGEYDLYYSSSMIECNRREQDGVEHELQL
LNEELRNIELECQNIMQAHRLQKVRDQYGDIWALHDESFRNYSTSTDVQRGKLDDIMEHP
EKSDKDSSSAYNTAESCRSTPLTVERSPDNSLQRMISITNRKNLRTTIVANQSSSGQSNR
ETTSAKTKPTEQNSAAENTVLASESSKITDQERQGSEHIPYLSPYHSSSYRYGNIPAHAK
HYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSQKCAEPKMEWKVKIRSDGTRYITKRPVRD
RILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRL
ECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHN
AFLSVTTV
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgacccgtcgcggttcgcggggccggtggcggcggagctgcagtgcgggctg
tgcgggcgggtgctggaggagccgctgtccactccgtgcgggcacgtcttctgcgccggc
tgcctgctgccctgggcggcgcggcgccgccgctgcccgctgcgctgccggccgctggcg
gccgccgagctgcgccccgtcctgcccctccgcagcctcgtccagaagctggaggtcaag
tgcgactacagcccgcggggctgcggccgcaccgtgcggctgcgggagctgcccgcccac
ctcgcggcgtgccgctacgggccgcccggccccgccgagccgcagccccgagcccggcac
ccctccggcagcgcggcggggcggccgcgggcgggcggcgggcaccgcagcctgcgggcg
ctgcggggcggcggcgccccggagccgggtcacgagctgaagagggaggccctgcgctgg
agcaggagggagaagtcgctgctggcgcagctgtcggcgctgcagagcgaggtgcagctg
acggcgcggcggtaccaggcgaagttcggccagtacatgagccacatcagcagcatcgcc
cgagacctggcgggcagccagcccggcaagggaggacaacgcaaaccattaatgatcatg
ctacaccgagaaaatgatactttggggttcaatattataggtggacgacccaatcagaac
aatcaggaggaatctgctgagggaatttatgtgtcaaagattttggaaaatggacctgca
gacaaagcagaaggcctgcaaattcatgacaagattattgaggtcaatgggaaggacctc
tccaaggccactcacgaggaggcagtggaagctttccgcaatgccaaggagcccattgta
gttcaggttttacgacgagccccagctaccaaaactcacagtagctctcaggatgttcgg
cttatggatgccagcactcagactgacatcacttttgagcatattatggctctagccaag
ctaaggccttctacaccaccagttcctgatatctgcccttttctactttcagatagctgc
cattctcttcacccagtggagcatgaattttatgaaggtaatgagtatctttccagcctg
cctgctgatgcagatagagcagaggactttgagtatgaggaggtggagctgtgccgcatt
ggcagccaggagaagctggggctgactgtctgttacagaactgatgatgaggaggacacg
ggaatctatgtcagtgaggttgatccaaacagcattgctgccagagatggacggatccgt
gaaggagaccgcattttgcaaataaatggccaagatgtccagaacagggaagaggcagtg
gcattgctctccagtgaagaatgcaggaaaattgtgttgctggttgcaaggccagagatg
cagctggaggaagggtggctggatgatgaaaggaatgaattcttagaggagttaaacttg
gaaatgttggaagagcagcataatgaagcaatgcagtacacagccaatgaggtggagcag
ccaaagaaacacgaagaggaagatggcactacagacactgcaacctcatcatctaacaat
catgagaaggacagtggggtggggcctacagatgaaagtctccgaaatgatgagagctca
gagcaagaaaatgcaacagaggagcagaatagagctaccctgcagagcaaacgggatctg
ggccacagccaggacacattaggcagtgttgagctccagtgcaatgaaagctttgtgtct
ggggaatacattgaatctgatttcataggacacccagaggaggaatgtgaaaggtttcgg
cagctgctggaactgaaatgcaagattcgaaaccatggggagtatgatctttattactca
agcagcatgatagaatgcaacagaagagagcaagatggagtggagcatgagctgcagcta
cttaatgaggaactgaggaatattgaacttgagtgccagaatattatgcaagctcaccgg
ctccaaaaggtgagagatcagtatggagacatttgggctttacatgatgaaagtttcagg
aattatagtaccagcacagatgtacaaagaggcaaactggatgacatcatggagcatcct
gagaagtctgacaaggacagctccagtgcttacaacactgctgaaagctgcaggagcact
ccactgactgtggagcgatcccctgataactctctccagaggatgatcagcataaccaac
aggaaaaacctaaggaccacaattgttgctaatcagtcatcctcaggacaaagcaacagg
gagacaacctcagccaaaaccaaacccactgagcaaaacagtgctgctgagaacacagtg
ctggcatcagaaagcagcaaaatcacagaccaggaaaggcaaggcagtgagcacattcct
tatttgtctccatatcacagttcttcttacaggtatgggaacatacctgctcatgcaaag
cattatcaaagctatatgcaactgatccagcagaagtctgctgtggagtatgcccaaagc
cagctcagcctggtgagcatgtgcaaagactcacagaagtgtgcagagccgaagatggaa
tggaaagtgaaaataaggagtgatgggacgaggtacatcacaaagagaccagttcgagac
aggatcctgaaggaacgtgccttaaagattaaagaggagcgcagtgggatgacaacagat
gatgatacaatgagcgagatgaagatgggtcgctactggagcaaagaagagaggaagcag
catttggtgcgtgctaaggagcagaggagacggcgggagttcatgatgaggagcaggctg
gagtgtcttaaggaaagtccacagagtggcagcgagggcaaaaaagaaatcaacattatt
gaactgagtcacaaaaagatgatgaaaaagagaaacaagaaaatcttggacaactggatg
acaatacaagaactgatgacacatggtgctaaatccccagacggcacaagagtgcacaat
gcctttttatcagttactactgtatga
DBGET
integrated database retrieval system
