Sylvia atricapilla (blackcap): 136362111
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Entry
136362111 CDS
T10263
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136362111 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136362111 (PATL1)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136362111 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
136362111 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
136362111
NCBI-ProteinID:
XP_066176482
LinkDB
All DBs
Position
6:complement(555067..562842)
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AA seq
764 aa
AA seq
DB search
MFRYPSLEDCPLDEDEDAFQGLGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
SSNREQDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTREPLQQPGGLNS
SIWDSSAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQARDEERDPSERALPRRSSSPIIG
SPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMGERKQKICDIYDNLRGKAPGQDRLSDDHFMQIMCIRKGKRLVARILPFL
PPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLSLGTVTSLVQQLTNLPQ
SAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLMATRELL
RIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQGIR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggactgcccactggacgaggatgaagatgccttccag
ggcctgggggaggaggatgaagacatcgaccagttcaacgatgacacctttggggcgggg
gccgtcgatgacgactggcaggaggcccacgagcggctggcggagctggaggacaaggcc
agctcgaaccgggagcaggacggtcccgttgggaatgacggggatgttctgggtgacccc
gaggacgcgctggccgagcgcctcacgcgactcgtcatcgacagcgagctggaggacccg
gccatcatgcaggccgtgcacaccagggagcccctgcagcagcctggagggctgaattcc
agcatctgggacagctccgccgtgctgcggcgcatccgggggccgctcctcactcaggag
atgccctcggtgtccgtgctggattatgccctgccccagaggccgccgcaggctcgggat
gaggagcgggatccgtcggagcgggcgctgccccggcgctcctcgtcccccatcattggg
agccccccggtccgggccgttcccatcggcacccctccgaaacaggccgccatcccaaac
ttcaaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgt
tatcccgctccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcc
tccctcctgggccacccgttcccccacagcgtctctcctgttctcacacacctgcagaga
gcccagctgctcggaggagcccaggccggccgaatgtcccccagtcagtttgcccgagtg
tctgggctggtggggagcccgctgccctccgtgaatcccaagctgctgcagggcagagtt
gggcagatgatgtccccggccggagggttccgtgcctttttcggggctccccctgccccg
cccccctcacagctgccgcaccctccgggccccggatcccacctgcagaacctgaggccg
cagccccagatgttccggccggacacgacccatttgcacccccagcaccgccggctcctg
caccagcggcagcagcagaaccggaaccagcaccggagcctcaacggctccgggggggac
cgagggggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctc
atgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gatccctacctggatgattattactatcagaattacttccagaagctggagaagttggca
gcagccgaggaagtgcacggcgatggtcccaagaaggagcgcactaaactcatcacccct
caggtggccaagctggagcacacctacaagccagtgcagtttgagggctcgctggggaag
ctcactgtctccagtgtcaacaacccccggaagatgatcgacgccgtggtgacgtcccgc
agcgaggatgacgagacaaaggagaagcaggtccgggataagaggcgacagacccttgtc
acgatcgagaagacgtacagcctcctcctggacgtggaggactatgagcgccgctacctc
ctgagcctggaaggggagcggccggccctgatgggagagaggaagcagaagatctgtgac
atttatgacaatctgagggggaaggcacccgggcaggacaggctgagcgatgaccacttc
atgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatccttcccttcctg
cctccagagcaagcggctgacgtgctcatggccacggccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgtcctc
taccacctttccttgggaacagtcaccagccttgtgcagcagctcacgaacctacctcag
agcgccgccgctcccaccaacctgcacctcactgctgtgctccaaaacaagttcggtctg
tccctgctgtacctggtcctgagccgaggggaggagctgcagagctcggacaccaacacg
gagctgatgcaggacaaccagtggacggagctgatgctgatggcgacccgggagctcctg
cggatccctcagggagccttggccaagcctgtgtccatcccctccaacttgatctccctc
ttctctcgctacgttgaccagcagaagctgaacctgctggagacaaaattgcacttagtg
caggggatccggtag
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