Sylvia atricapilla (blackcap): 136362234
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Entry
136362234 CDS
T10263
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sati03009
]
136362234 (IGHMBP2)
03012 Translation factors [BR:
sati03012
]
136362234 (IGHMBP2)
Enzymes [BR:
sati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136362234 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
136362234 (IGHMBP2)
Ribosome biogenesis [BR:
sati03009
]
Eukaryotic type
Other ribosome biogenesis factors
136362234 (IGHMBP2)
Translation factors [BR:
sati03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136362234 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
Helicase_RecD
AAA_16
ResIII
AAA_22
nSTAND3
DEAD
SLFN-g3_helicase
UvrD-helicase
Flavi_DEAD
AAA_25
IstB_IS21
T2SSE
AAA
ABC_tran
DAP3
Herpes_ori_bp
PhoH
Glyco_transf_21
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
136362234
NCBI-ProteinID:
XP_066176694
LinkDB
All DBs
Position
6:9176277..9199614
Genome browser
AA seq
997 aa
AA seq
DB search
MAAEAAERQLGLLRDEREAELAQSRAWQESVSLKELQRRGVCLLKLQVTSQRTGLYGRLL
VTFQPRKWDSDTELPSNSFGPGDIVGLYESAGQGDPLCTGVVTRVTPKAVTVALEEPRDG
ELAVDHERSFRLLKLANDVTYNRLKRALIALKQYRGGPASDLIDVLFFASAPRAFPETKP
LQFFNASLDESQREAVSFSLAQRELAIVHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPS
NVAVDNLVERLAGGRARLLRLGHPARLLQPIQQHCLDAVLARGDNAHIVADIRRDMDQAW
AKTKKAQDKGERSHLLGEIKTLRKELKEREEAAMTAALSQASVVLATNTGASSDGPLKLL
PETHFDLVVIDECAQALEASCWIPLLKAPKCILAGDHKQLPPTIISHRAAAEGLSLSLME
RLAGHYGQQAVRMLTVQYRMHRDIMEWASSELYGGRLSAHPSVAQHLLRDLPGVSSTEET
SIPLLLIDTAGCGLFELEVEDEQSKGNPGEVQLVGMHVQALVDAGVKAKDIAVVAPYNLQ
VDMLRQHLCHSHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEERRINVAVTRA
RRQVAVVCDSHTVGSRPFLRRLLDHLSQHGLVRSAFEYLDDLVPQNYPGEGCAQQRPKPP
GPKARPAPAGKLKAAAAAGAGSQKPGARSSPSAAGAGRDGSGSKEGGDRFRAMLVAFLAS
SEAQLDFPASLNSHERMLVHVLAEELGLQHLSSGEGRDRYISVCKRLPKQPPPPSKPLPE
PPPPSKPLPEPPPPSEPLPEPPPPSEPLPEPQHPSGNTPHPAEPGENSKGSGKVDLKALH
LERVQREKARREEAARKVQEPSRGSRKKDKTEAKGKPAIESTAEEDFDALISAAIEADRT
CGFPRCKASVTTLGQLCHHCQRLFCLSHHIPEVHGCGEKAKAHARQRISREGILYPGSGP
KDKSLDPAKRAHLQRRLDKKLSELTSQRKGKKKDKEK
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaggcggcggagcggcagctggggctgctgagggacgagcgggaggccgag
ctggcacagagcagggcatggcaggaaagcgtctccctgaaggaattgcagcggagaggc
gtctgcttgctcaagctccaggtcaccagccagagaaccggcctctacgggcgtctcctc
gtgacattccagcccaggaagtgggattcggacaccgagctgccctccaacagctttggc
cctggggacatcgtggggctctatgagtcagctgggcagggggacccgctgtgcacgggc
gtggtgacacgtgtcacccccaaggcagtgacggtggccctggaggagccccgggatggg
gagctggccgtggaccacgagcgctccttccgcctgctcaagctggccaatgatgtcacc
tacaacaggctcaaaagagctttaattgcactcaagcagtaccgtggtggcccagcctct
gacctgattgacgtcctcttctttgcctctgctcccagagcgttccctgaaacaaagcct
ctgcaattcttcaatgcctccctggatgagtctcagagggaagctgtgtccttctccctg
gctcagagggagctcgccatcgtccacgggcctcctggcacagggaaaaccacgaccctg
gtggagatcatcctgcaggctgtgcagcagggcctgaaggtgctgtgctgtgccccgtcc
aacgtggccgtggataacctggtggagcggctggcgggcggccgggcgcggctgctgcgc
ctgggacacccggcccgcctgctccagcccatccagcagcactgcctggacgccgtgctg
gcccgaggggacaacgcccacatcgtggctgacatcaggagggacatggaccaggcctgg
gcaaaaaccaaaaaggcccaagacaagggagagagaagccatcttctgggagagattaag
accctgaggaaggagctgaaggagcgagaagaggctgcaatgactgcagctctcagccag
gccagcgttgtccttgccaccaacacaggtgcttcctcggacggccccctgaagctgctg
cctgaaacccattttgacctggtggtgattgatgagtgtgcccaggctttggaagccagc
tgctggatccctctgctgaaggctcccaagtgcatcctggctggggatcacaagcagctg
ccccccactatcatctcccacagggcggcggccgaggggctgtccctgagcctgatggag
cggctggcggggcactacgggcagcaggcggtgcggatgctgacggtgcagtaccgcatg
caccgggacatcatggagtgggcgtcctcggagctctacggcggccggctcagcgcacac
ccctccgtggcacagcacctgctcagggacctgccaggcgtctcctccacggaagagacc
agcattcccttgttgctcatagacaccgctggctgtggcctctttgagctggaagtggag
gatgaacagtccaaggggaatccaggggaggtccagctggtggggatgcatgtccaagcc
ttggtggacgctggtgtgaaggccaaggacatcgctgtggtggccccctacaacctccag
gtggacatgctccgacagcacctttgccacagccaccctgagctagaaattaaatcagtg
gatggtttccaaggaagggagaaggaggcagtgatcctgtcctttgtcagatccaacagg
aaaggtgaggtgggtttcctggccgaggagcggcggatcaacgtggcggtgacgcgggct
cggcgccaggtggccgtggtgtgtgacagccacacggtgggcagccgccccttcctgcgc
cgcctcctggaccacctgtcccagcacggcctcgtgcgctccgccttcgagtacctggat
gacctcgtgccccagaactaccccggggagggctgtgcccagcagcgccccaaaccgccc
ggccccaaagcacggccggctccggctgggaagctcaaggcggcagcggcagccggagca
gggagccagaaaccgggagcacggagctccccgagcgctgccggagctgggagagatggc
tcggggtccaaggagggtggggacaggttcagggccatgctggtggccttcctggcgagc
agcgaggcgcagctggatttcccggcgtccctgaattcccacgagcggatgctggttcac
gtgctagcagaggagttggggctgcagcacctgagctccggggagggccgggacaggtac
atcagtgtctgcaagagactccccaagcagcccccaccgccctccaagccccttcctgag
cccccaccgccctccaagccccttcctgagcctccaccaccctctgagccccttcctgag
cccccaccgccctctgagccccttcccgagccccagcatcccagtgggaacaccccgcac
cctgcagagccaggagaaaacagcaagggctcagggaaagtggacctgaaagccctgcac
ctggagagagtccagagggagaaagccaggcgggaggaggcggcgaggaaggtgcaggag
cccagccgtggcagcaggaagaaggacaagactgaagccaaaggaaaaccagcaattgag
agcacagccgaagaggatttcgacgctctgatctctgctgccatcgaagctgacaggacc
tgtggctttccccgctgcaaggcctctgtcaccaccctgggccagctctgccaccactgc
cagcggctcttctgcctcagccaccacatccctgaggtgcacggctgtggggagaaggcc
aaggcccacgcgcggcagcgcatcagccgggaagggatcctgtatcccgggagcggcccc
aaggacaaatccctggatcctgccaagagagcccacctccagcggcgcctggacaagaag
ctcagtgagctgacgagccagaggaagggcaaaaagaaagacaaggagaaatga
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