Sylvia atricapilla (blackcap): 136362424
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Entry
136362424 CDS
T10263
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
136362424 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sati03032
]
136362424 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
sati03400
]
136362424 (TOPBP1)
DNA replication proteins [BR:
sati03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
136362424 (TOPBP1)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
136362424 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
PTPRCAP
Motif
Other DBs
NCBI-GeneID:
136362424
NCBI-ProteinID:
XP_066176992
LinkDB
All DBs
Position
1:complement(44078355..44101795)
Genome browser
AA seq
1517 aa
AA seq
DB search
MRSSKDPFFVKFIKSSGSSEYFSKALESIKEFQSEEHLQILEEETVLKIKENDKSLYVCD
PFRGMGFSHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
GMMRYTDVNMEDYSCPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDETMYKIEAGSKLSNAPSTSTPTND
TSKTANHTLSDVSHISSIGLCGVNETACSSAMSSRLDPPDELENLDMSSFQAPEDLLDGC
RIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVIVGENNDELKHFLDETAHRPHIV
TAKWLLESFGKGCLCPVEHYIPLNYQLLENPILEQPGMKSIFSKKTSVLKKDAVNVIKHQ
KAAEDDFLSQYANDYSTLDEVGKLTSSTFSYVANSTAQGENQPSVCNGSLAESSALAEGG
LFFRKRFLLLGFGEEYESYLADIIKENAGEVLPPQGRALADYAVVPLLGCTVKATVGDVV
TNTWLMTCVEQKALVDLQSNPLFTPVLVMEEATPLEDCVLSFSQFTGAERDSLVYLAGLL
GARVQEFFVRRANVKKRMFASTHLVVREPNGSKYEAAKRWNLPAVTVAWLLQSARTGKRA
DESKFLVENAEAEESFITQLSKTPATVKSHDSEQPTHLLEAGKKGAVTPLDINRFQSKAF
QAVISHHTGKTTPVAQGGPLQKEPSLNLDTPSKFLSNDKLFKPSFDIKDALEALETPRGS
EQRTRKLSTPLSEVISRNLKMALASSTTLAAALTASPQLAAAQQEVEEEPKPLADAVIYV
SKKLSKRQRELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIVSEH
WLLESARECKRLPESLFPHTYNPKMSLDISTVQDIRLSSSFSKPLSTGKAAEEDEIMSVD
EDDAEDDVTTDQIKETVTVVEEQIAASESKGVLTQALEMRENFQRQLQELMSATSLVKPQ
GQRGSLSRSSFDGSPATPDSTRSVRNGRSRVLEALRQSRQSLADINTEPSQSEQIIWDDP
TAREERARLVSNLQWPNSPSQYLEQGQSNTSKNVDESALKGSVPDGEMAGIAVPGAGDGD
VIESLKNPICRDPETPIKDNLIPTPQAPSIAFPLANPPVAPEPKEKVITEDEKADEEIEK
LRKFQLSSLNPQERFDYCHLIEELGGTVLEKQYFDPSCTHIVVGHPLRNEKFLASMAAGK
WVLHRSYLEACRGAGCFVQEEDYEWGSKSILNVLSGINVNQKKLALAAMRWRKKIHKGRQ
ETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVLSGHSAPLFKEATHLFADFSKLK
PDDPRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYLQNNSDLGTRLSQ
KRKAVGEMSRVKQSRIH
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagtaaggatccgttttttgtgaagttcataaagtcttccgggagttcggag
tatttttctaaagctcttgagtctataaaagaattccagtcagaagaacatctccagatc
cttgaagaagaaacagtactcaagataaaagaaaatgataaatcactttacgtttgtgat
cctttcagaggcatgggtttcagtcatctcaaaaagcttggctgtaggattgttggacca
caggtagttctgtactgcatgcagtcgcagaggtgtgtccccagggctgagtatcccgtg
tacaacatgaccatggctgatgtcactgtgtcctgtaccagcctggagaaggacgtgagg
gaagaagttcataaatatgtgcaaatgatgggtggatgtgtatacagagacctcaacgtg
tcagtaactcatcttatagctggggaagttggcagcaagaaatacttggtagctgcttcc
ctgaagaaacctattttgcttccctcatgggttaagacattgtgggataagtctcagcaa
ggcatgatgaggtacactgatgtcaacatggaagactactcttgtcctgtgttccttggc
tgcacgatttgtgtcactggcttgagcagctccgacaggaaagaagtgcagcgcctcact
gctgagcacggtgggcagtacacagggcagctcaagatgaatgagtgcactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctgtgcagtggttttctgacagcatcaagaaaggcttctgccaggacgagacaatgtat
aaaatagaggctggatcaaaactgagtaatgcacccagtacatcaacacctacaaatgac
accagcaagactgctaatcataccctttcggacgtcagccacatttccagtatcggtctg
tgtggtgttaatgaaactgcatgtagttcagctatgagcagcagactggatcctcctgat
gagctggaaaacttggacatgagttcttttcaagcccctgaagacttgttagatgggtgt
cgaatctatctctgtggcttcagtggcaggaagttggacaagatgagaaggcttattaat
tgtggtggtggcgttcgatttaatcaacttaatgaagatgttactcatgtcattgtgggg
gaaaataacgatgaactgaaacacttcttggacgagacggctcacaggcctcatatagtg
acagcaaagtggttgctggagtcatttggtaaaggttgtctatgtccagtggagcactat
atccctctaaactaccagctgttagagaatccaattttagaacaacctggaatgaagtca
attttttcaaaaaaaaccagtgtcttgaagaaagatgctgtgaacgttataaagcaccag
aaagctgctgaagatgacttcctctctcaatatgccaatgactattctacactagacgaa
gttggaaaactaacatccagtaccttcagttatgttgctaattctactgcccaaggagag
aatcagccttctgtctgtaatgggtctttggcagagtcttctgcactggctgaaggagga
ttatttttcaggaagagatttcttcttctgggttttggtgaagagtacgagtcctacttg
gcagatattataaaggagaatgctggggaagttctgccaccacaaggcagagcccttgca
gactatgctgtggtacctttattggggtgcaccgtgaaggcaactgttggtgacgtcgtc
acaaatacatggctgatgacatgtgtggaacagaaggcccttgtagatcttcaatccaat
ccacttttcacaccagtcctggtaatggaagaagctacccctctggaagattgtgttctt
tcttttagccaattcacgggtgcagagagagactcccttgtttatctggcaggactgctg
ggagccagagtccaagagttctttgtgcggagagccaatgtgaaaaaaagaatgtttgcc
agcacccatcttgtggtgagagaaccgaacggctccaagtatgaggcagcgaagagatgg
aatttgccagcagtcactgtagcctggcttttgcagtctgcaaggacaggaaagagggca
gatgaaagcaagttcttggttgaaaatgcagaggctgaagagagcttcattactcagctt
agcaagacaccagcaactgttaaatctcatgattcagaacagcctactcatctccttgaa
gcaggaaaaaaaggagctgtcaccccccttgatatcaacaggttccagagtaaagctttc
caagctgtaatctctcatcatactgggaagacaactcctgttgcacaaggaggaccactc
cagaaagaaccatctttaaatcttgacacaccatcaaagtttctttccaatgacaagttg
ttcaagccttcttttgatataaaggatgctctggaagctttagaaactcctagaggttct
gaacaaagaaccaggaaactgagcacacctctctccgaagtcatcagcagaaacttgaaa
atggcactggcaagcagcacaacacttgcagcagctcttactgccagccctcagttggct
gctgcacagcaggaagtggaagaagagcccaagcctctagctgatgctgttatatatgtt
agtaaaaaacttagtaagaggcaaagggagctgaatgcagtagcagcttctcttggagca
gactacagatggtgctttgatgaaacagtaacacacttcatctataagggaggacagaat
gataacaataaggagtacaaatctgttaaagaacggggtatacatattgtttcagaacat
tggcttttagagagtgcccgagaatgtaaacggcttcctgaatctctctttcctcacact
tacaatcccaaaatgagcctggacatcagtacagttcaagacatcaggctttcctcctcc
ttcagtaaacctctttcaacgggaaaagcagcagaagaagatgagattatgtcagtggat
gaagatgatgctgaagatgatgtaactactgaccaaataaaggagacggttactgtagtg
gaagaacaaattgcagcaagtgaatccaaaggagttttaacccaagcactagaaatgagg
gagaacttccaaaggcagctgcaggagctcatgtctgccacatcactagtgaaaccacaa
gggcaaagaggatccctttccaggagcagctttgatggttctccagccactcctgatagc
acgcggtctgtgcgaaatggccgcagtagggtcttggaagctctaaggcagtcccgccag
tcactggcagatataaacacagagccatcccagagtgagcagatcatttgggatgatcct
actgcgagggaagagagagcaagacttgtcagcaaccttcagtggcctaatagtccttct
cagtaccttgagcaaggtcagagtaacaccagtaagaacgtggatgagtctgccctcaaa
ggatctgtacctgatggagagatggctggtatagctgttcctggggctggggatggagat
gtgattgaaagtctgaagaatcccatatgtagagatcctgaaacgccaattaaggataac
ttgattcctactccacaggcccccagcattgctttccccctggctaaccctcctgtggca
ccagagcccaaagaaaaggttattactgaagatgagaaggctgatgaagaaatagaaaaa
ctccgtaaatttcagctgtcttcccttaatcctcaagaaagatttgattactgccatctg
attgaggaattaggtggaacagtactagagaaacagtactttgatccgagttgcacacac
attgttgtgggacatccccttcggaatgaaaagttcttggcctcgatggcagctgggaag
tgggtgcttcatcgttcctacctggaggcatgtagaggagctggctgctttgttcaggaa
gaagactatgagtggggaagtaagtccatacttaatgttttgtctggaatcaatgtaaac
cagaagaaactagcactggcagccatgaggtggaggaaaaaaattcataaagggaggcaa
gaaacgggtattgttgagggagctttcagtggctggaaagtcatcctgaacgttgatcaa
accaaggaagcaggattcagacgccttcttcagtcaggaggagcaaaagtgctttctggc
cattctgcacctctctttaaagaagcaactcacctctttgctgacttcagcaagctgaag
ccagatgaccccagggtgaacgtggcagaggcagcagcccagggagtgaactgcctcaaa
cctgagtacatcgctgactacctcatccaggatccacctccccctatggagtcttactgc
ctgccggaagctgaatcttatcttcagaacaactcagatcttggaaccagattatcccag
aaaagaaaagcagtgggagagatgagcagagtcaagcaatccagaatacactaa
DBGET
integrated database retrieval system
