Sylvia atricapilla (blackcap): 136362739
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Entry
136362739 CDS
T10263
Symbol
EXOSC7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136362739 (EXOSC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136362739 (EXOSC7)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
136362739 (EXOSC7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
136362739 (EXOSC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
136362739
NCBI-ProteinID:
XP_066177628
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All DBs
Position
1:45605618..45625867
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AA seq
290 aa
AA seq
DB search
MASVVLSEAEKLYIVHGVQEDLRVDGRGCEDYRCAEVETEVVSNTSGSARVKLGETDILV
GIKAEMGTPKLEKPDEGYLEFFVDCSSNSPELEGRGGEELGTDIANTLYRVFSCENSVDL
KSLCINPKEHCWVLYVDVLLLECGGNIFDAISVAVKAALFNTRIPKVRVLEDEEGTKEIE
LSDDPYDCIRLNVDEVPCIVTLSKIGYRHVVDATLQEEACSLASLLISVTSKGAITSMKK
VGKGSLDPESIFEMMETGQRVGKSLHIALQKILDEEENLGTSRPKVGFLG
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtggtgctgagcgaggcggagaagctttacatcgtgcacggcgtccaggaa
gaccttcgtgtagatggtcgaggctgtgaagactacagatgtgcagaagtagaaacagag
gttgtatcaaacacaagtggatctgcaagagtgaagctgggagaaaccgatatcttggta
ggcataaaagctgaaatggggacaccgaagttggagaaaccagatgaaggttacctggaa
ttttttgttgactgttcttcaaattctcctgagttggaaggccggggaggagaggagctt
ggcactgatatagcaaatacactgtacagagtattcagctgtgagaacagtgtagacttg
aagtccctttgtattaatcccaaagagcactgctgggttctctatgtggatgtattgtta
ttggaatgtggtgggaacatcttcgatgctatctctgttgcagtgaaggcagctctcttt
aacacaagaatacccaaagtccgtgttctggaggatgaagaaggcaccaaagagattgag
ctgtctgatgacccttatgattgtattcgactcaacgtagatgaggtgccctgtattgtc
acactaagcaaaattggatataggcacgtggtggatgctacccttcaggaagaagcctgt
tctttggcaagcctgcttatttcagtgaccagtaaaggtgccatcacttccatgaagaag
gtggggaaaggtagcctggatcctgagagtatctttgaaatgatggagacaggacaaaga
gtaggcaagtcacttcacatagcccttcagaagattttggatgaagaagagaatttgggg
acttcacgaccaaaagttggatttctaggatga
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