Sylvia atricapilla (blackcap): 136363276
Help
Entry
136363276 CDS
T10263
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sati04147
]
136363276 (COL18A1)
00535 Proteoglycans [BR:
sati00535
]
136363276 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
sati00536
]
136363276 (COL18A1)
Exosome [BR:
sati04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
136363276 (COL18A1)
Proteoglycans [BR:
sati00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
136363276 (COL18A1)
Glycosaminoglycan binding proteins [BR:
sati00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136363276 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
136363276
NCBI-ProteinID:
XP_066178441
LinkDB
All DBs
Position
7:complement(247727..266540)
Genome browser
AA seq
1768 aa
AA seq
DB search
MGTTKDPQFLGSETSKHPQLLGLGTTEDLQLLESGTTENPQLLRMGTTEDPQLLGSGTSK
DPQLLGLGTTEDLQLLGLGTTEDPQLLGMSTTDLQLSVTGHTKDAQLLRTWTTEDPQLLG
TGTTKDPQLPGMGTTENLHLLAMRDTEDTQLLRTVTPENLELLGNTENPQLLWTVTPEDP
ELLGNTENSQLLKTVTTNNPEFLGTETPTVMETQVSLQRPAGPQPGSALFPSSPGDSTPE
QPVPSRHPSAPPPHHLHGASPNLWHGTSRPGLALASRNGSQSPPRPDLRVDKGVDPPAAA
NPVPLEFDLLTATMRLYRAGSAELASFSPGLMPVAGRCQPIPTYLPFCSVLGTSHVRLPN
YLQHGSEEEIRAALHEWEGLLESRCHRYLEWFLCLLLLPGCSPLVPVTPPPCQGFCEAIR
DLCWTHLAGGRLPLPCDALPEEDDGVSCVFINASAESLSAEVSLLELIGDPPTEEIHRIY
GPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIY
VGVKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAIAVEEEEVVLYLDC
EEHERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLRLRGDPRAAERQCEEEE
DDAEVSGDFGSGMEGGQQPSGKVEGVPGLVDAVPVTSPPVAGGSGPRSGGGSPQQAERTR
AEETRRVSTGGTGRKGEKGEKGERGLKGDSGTSGMIGPGSVKGQKGEKGDLGIKGSAGFG
YPGSKGQKGEPGEPGPPGTLSRHADGLVMEQVTGPPGPPGKDGFPGRDGEPGDPGEDGKP
GEMGPPGFPGMPGEPGLKGEKGEPGLGPRGPPGPPGPPGPPGPSSKNDKLTFIDMEGSGF
GGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRTDLLGSPGLPGRDGIPGPPGPAGP
QGPPGRDGEAGPPGPKGERGDMGDLGLPGLPGPKGSKGETGPAGPPGEMGLAGLPGPIGP
QGLPGPPGPPGPPGPGYDAGFGDMEGSGLSFSPGPPGPEGPRGVPGLPGLKGEVGSPGQP
GLLGPKGDAGIPGVDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPG
QVITVSSEDKSLVAFPGLEGRPGRAGFPGPVGPKGDQGSAGPQGAPGLKGEKGEPGVIIS
PDGTVVTAKVKGEKGEPGLRGPMGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPA
DVLGSRGPPGPPGPPGPPGPPGSIVYSNGNTFSDSSHPTFPGFHQFLGQKGEKGDTGPPG
PPGQFPYDASHFGASLRGDKGDAGPKGEKGEPGSTPLYGPGVSGLPGPPGPQGYPGLPGP
KGESIVGPPGPPGPQGPPGMGYEGRQGPPGPPGPPGPPSIPGAHRQAVSIPGPPGPPGPP
GPPGTSGMSLGLRVVPTYQAMLSAVHELPEGSLVFLTNRQELYIRLRGGFRRVLLEEHNL
IPSSALDNEVYDKPPTLHYAGPQPRGPLHPLRNHVPAATARPWRGDEVVANQHRLPEQPL
LHHQQELINGYYIHRRPDPAPVAAHVHQDFQPALHLVALNTPLSGSMRGIRGADFQCFQQ
ARQVGLAGTFRAFLSSRLQDLYSIVRRADRATVPIVNLQDEVLFNNWEALFTGSGAPLRA
GARILSFDGRDVLQDAGWPQKNVWHGSDAKGRRLPESYCETWRTEERAVTGQASSLASGK
LLEQAASSCQHTFIVLCIENSFMTAAKK
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atggggaccaccaaagacccccagttcctggggtcagagacctccaagcatccacagctc
ctggggttagggactactgaggatctgcagctgctggagtcagggaccactgagaaccca
cagctcctgaggatggggaccactgaagacccccagctcctgggttcagggacctctaag
gacccccagctcctggggttaggaactactgaggacctgcagctgctggggttgggcacc
actgaggacccacagctcctagggatgagtaccacagacctgcagctctcggtgacgggg
cacaccaaggatgcacagctcctgaggacatggaccactgaggaccctcagctcctgggg
acagggaccaccaaggacccacagctcccaggcatggggaccactgagaatctgcacctc
ctggcgatgagggacaccgaggacacacagctcttgaggacagtgacccccgagaaccta
gagctcctggggaacactgagaacccacagctcctgtggacagtgacccctgaggaccca
gaactcctggggaacactgagaactcacagctcctgaagacagtgaccaccaacaaccca
gagttcctggggacggaaactcctacagtaatggagacacaggtgtccttgcagagacca
gcaggtccccagccaggtagtgccctttttccttcctcaccaggtgacagtacccctgag
cagccggtgccatcccggcacccctcggcaccacctccccatcacctccacggagcatca
ccaaacctatggcatggcaccagccgcccggggctggctctggccagcaggaatgggagc
cagagcccccctcggcctgacctgagggtggataaaggtgtggatcctcctgctgctgct
aaccccgtccctctggagtttgatttactaaccgctaccatgcggctctacagggctggc
agcgcagagctcgcatccttctctccgggactgatgccagtggccggccgttgccagccc
atcccgacctacctgcccttctgcagtgtgctgggcaccagccatgtccgattgccaaac
tacctccagcacggcagcgaggaggaaattcgggcggctttgcatgagtgggaggggctg
cttgagtcgcggtgccatcgctacctggagtggttcctctgcttgctgctgctccccggc
tgtagccccttggtccccgtcacccccccaccatgccagggcttctgcgaggccatcaga
gacctgtgttggactcacttggccggcgggcgcctgcctctgccttgcgatgctctccct
gaggaggatgacggggtttcttgtgtctttattaatgcttctgcagagagcctgagtgct
gaggtcagcctgctggagctgatcggggacccgccgacagaggagatccacagaatttac
ggccccgacaacaaccctggctacgtcttcggtcccaatgccaacacgggccaggtggcc
cggtaccacctgcccagccctttctaccgggacttctcgctgctgttccacatccagccc
accacgccccgggccggtgtgctctttgccgtcacggactcctcacagagcatcatctac
gtgggtgtcaagctctcggagctgcgggcaggccagcagcagatcatcttctactacacg
gagccaggctcacccagctcctacccggctgccaccttcactgtgcccaccctgctcaac
cagtggacgcgcttcgccatcgccgtggaggaagaggaagttgttctctacctggactgt
gaggagcatgagcgtgtccgcttcgagcgctccccagatgagatggagctggaagagggc
tctgggctctttgttgctcaggctggaggggctgacccagataaataccagggggtgatt
gcagacttgaggctccgaggggacccgcgggcagccgagcgccagtgcgaggaagaagag
gatgacgcagaggtctctggcgattttggcagcgggatggaaggtggtcagcagccttcg
ggcaaggttgagggtgtcccagggctggtggatgctgtccccgtgacctccccccccgtg
gcagggggcagtggtccgaggagtggtggggggtccccacagcaagctgagaggaccagg
gcagaggagacacggcgggtctccacgggaggcaccggccggaaaggtgaaaagggagag
aagggggaacgtggcttgaaaggagactcagggaccagtggcatgatagggccaggcagt
gtcaagggtcaaaagggggagaaaggagacctgggcatcaagggcagtgctggatttggc
taccctggctctaagggccaaaaaggagaaccaggtgaacccggaccccccgggaccctc
tctcggcacgctgatggcttggtgatggagcaggtcaccggccccccagggccaccgggg
aaggatggattccctggcagggatggtgagcctggagatcctggcgaggatggcaaacct
ggtgaaatggggcccccggggttccccgggatgccgggggagccaggcctgaagggggag
aagggcgagccaggcctggggccgaggggaccccctggaccacctggccctccaggaccg
ccgggaccctcctccaagaatgacaagctgaccttcattgacatggagggctctggcttt
ggcggtgacctggagagcctgaggggtccacgagggccacctggtcccccagggccacct
ggcgtgcctggtttgccaggggagccgggacggtttgggatgaaccgcacagacctgctg
ggatcaccggggctgccgggcagggacgggatccccgggcccccagggccagcgggtcct
cagggtcctccaggaagagatggagaggctgggccaccgggccccaaaggagagcggggt
gacatgggtgacctcggccttcccggcctgccaggacccaagggcagcaaaggagaaaca
ggaccagcaggacccccaggagaaatgggcttagctggccttcccgggcccattggaccc
caagggctgccagggccccccggacccccgggaccaccggggccaggctatgacgctgga
tttggtgacatggagggctcggggctgtcattcagccctggaccgcctggacctgaagga
ccacggggtgtgccgggactgccaggtctgaagggagaggtgggcagccctggacagcct
ggcttgctgggaccaaagggagatgctggcattcctggtgtggatggccgccctggcctg
gaaggcttccctggaccacagggacccaaaggtgacaaaggcagcaccggtgagaaggga
gagcgaggccaagatggagtggggctgcctggcccccctggcccacctggtccccctgga
caggtcatcactgtctccagtgaagataagtccttggtggcttttcctggtctagagggc
agaccaggccgtgctggcttcccgggtccagtgggaccaaaaggagaccaggggtcagct
ggtccccagggtgccccaggcttgaagggggagaagggggagcctggtgtcatcatcagc
cctgatgggactgtggtcactgccaaggtgaaaggagaaaagggggagccgggactgcgg
ggcccgatgggaccatcgggtcccccgggacgagcagggatgaagggagagattggcttt
ccaggcagacccggacgtcctggcatgaacgggctgaagggcgagaagggtgaccctgca
gatgtgctgggctcgcggggtcccccagggcccccaggaccccctggaccccctgggcca
cctggcagcatagtctacagcaacggcaataccttcagtgactccagccatccgacgttc
cctggtttccatcagttcctaggacaaaagggggagaaaggtgacactggacccccagga
ccccctggccagttcccctatgatgcgagtcactttggtgctagcctgcggggtgacaag
ggagatgcaggtcccaagggtgagaagggcgagccgggcagcaccccactctacggtcct
ggagtttctggacttccagggcctccaggaccccagggataccctgggctgccgggtccc
aagggggagagtattgttgggccaccagggcctccagggcctcagggtccccctggtatg
ggatacgaggggcggcagggcccccctggccctcctggtccgcctgggccaccgtccatc
ccaggtgcccacagacaagctgtcagcatccctggacccccaggaccaccgggacccccc
ggaccaccaggcactagtgggatgtccttggggctccgggtcgtgcccacgtaccaggca
atgctgagcgccgtgcacgagctacccgagggcagcctcgtcttcctgaccaacaggcag
gagctctacatccgcctgcgcgggggcttccgcagagtgctgctggaggagcacaacctg
atccctagttcagctctggacaacgaggtgtacgacaagccacccaccctccactacgcc
ggcccccagccccgcgggcccctgcacccgctccgcaaccacgtccccgcagccaccgcc
cgtccctggcgtggggacgaggtggtggccaaccagcaccgcctgcccgagcagcccctg
ctgcaccaccagcaggagctcatcaacggatactacatccaccgccggccagatcccgcc
cccgtggccgcccacgtgcaccaggacttccagcctgcccttcacctagtggccctgaac
accccgctgagcggcagcatgcgtggcatccggggcgctgatttccagtgcttccagcaa
gcccggcaggtcgggctggccggcaccttccgcgccttcctgtcctcgcgcctgcaggat
ctctacagcatcgtgcgcagggctgaccgcgccaccgtccccattgtcaacctccaggat
gaagtgctcttcaataactgggaagcccttttcacgggcagtggggccccactgcgagcc
ggcgcccgcatcctctcctttgacggacgggatgtcctgcaggacgcaggatggccgcag
aagaacgtctggcacggctcagatgccaagggccggcgcctgcctgagagctactgcgag
acatggcggacagaggagcgcgcggtcaccggccaggcttcctccctggcctctggaaaa
ctgctggagcaggcagccagcagctgccagcacaccttcatcgtcctctgcatcgagaac
agcttcatgactgccgccaaaaagtga
DBGET
integrated database retrieval system
