Sylvia atricapilla (blackcap): 136363352
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Entry
136363352 CDS
T10263
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sati03400
]
136363352 (PMS1)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
136363352 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HATPase_c_3
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
136363352
NCBI-ProteinID:
XP_066178619
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All DBs
Position
7:7610599..7655171
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AA seq
933 aa
AA seq
DB search
MKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDVKLENYGFSKIEVRDNGSG
IKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSIAEVLVTTKTAADDFSMQ
YALDSSGHVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHCCEYPEINLSGFL
PKAESDSSLTSLSSSERSFIFINNRPVLQKEILKLIRQYYSQVTQKDCTRLYPVFFLSIT
VPASAVDVNITPDKTQVLLHDKESVLLAVENVLKSLYGPLPAAVPGESNKTDVTSEDTFV
HRTDQTDVAHNEMGPSGNDELHAHTSFLSLSSDVQNCQAGKNAEICLNHQTFSGDNVRSR
LDKREVSRSDAFPDSSLNLLREEEQNGQNMADTQSKSVPVDPESKKAHEHLLSSDNIDKI
DKNEEALVPKDLPEISADSWSTGSAFKDSLGDKLEPVKILIPEVGGATKKQNEYTGEKSS
DSQSSNQSIKKKNLISEKFGHVTAYDLINSRIIKKPKSAFEFFTHECRPKLINDNPKTSM
NDILLTIEEQWKNLNEEEKQNYEMKATKDQERYNREVKKASAQPMHRPAKEADKHKPKLK
SSASDQQKLDKIFHNQIEKKGKVEQPVKIVTVPFSLSCCRRHLQRQARNVSDEQELFLIR
RQSFPDVWILATEKNVKLLNPYRLEEALLCKRLLVNHKLPVERLDNPIVLTDSLIGGSQY
MAALYKMQKNYQSFHGSGYLSDPRLVANGFQIKVIEGVSATENHLEVEGMANCLPYYGIS
DLKEILHAVVNRNAKEVYECRPLKVINYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgcctggggagacaattcgtctcctttcaagttctcaggtgattacttca
gttgtcagcgtggtgaaggagctgatagaaaattccttggatgccagtgctacaggcatt
gatgttaaattggagaattacgggtttagcaaaatagaagtgagagacaatggcagtgga
atcaaggttgacgatgttccagtcatggcaattaaacactacacctcaaaaatcagctct
tctgaggaccttgaaaggctgacaacttatggtttccgtggggaagctttgggatcgatt
tgcagcatagcagaggttttggtcacaacaaagacagctgctgatgatttcagcatgcag
tatgctttggatagcagcgggcatgtaacctctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctaaatctgtttaagaatcttcctgtaagaaagcagttttactcg
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
atcataaaaccagacctgaggataacattaacgcataataaggcagttatttggcagaag
accagggtatcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacactgctgcgaatatcctgagataaatctttctggatttctc
ccaaaagctgagtcagacagttctttgacaagcctttcaagttcagaaaggagtttcatt
tttataaataatcgtccagttcttcagaaggaaatactgaagttaattcgacaatactac
agtcaggtgacacaaaaggactgtactcgtttatatcctgttttctttttgagtattact
gtacctgcctctgctgtggatgtgaatataacacctgataaaacacaagttttgctgcat
gataaggaatctgtcttacttgcagttgaaaatgtgttgaaatcactgtatgggccacta
cctgctgcagtccctggtgaaagtaataaaacagatgttacctcagaagacacgtttgtt
cacagaacagaccaaacagatgtggctcataatgagatgggaccatctggaaatgatgag
ctacatgctcatacttcattcctttcactcagcagtgatgtgcaaaactgtcaagcagga
aaaaacgctgagatctgcttaaatcatcagacatttagtggtgataatgtacgcagtcgc
ctggacaaaagagaggtttctaggagtgatgcctttccagacagttccttaaatttattg
cgtgaggaggaacagaatggacagaatatggctgatactcaaagtaagagtgttcctgtg
gaccctgagtctaaaaaagcccatgagcatctgttgagttctgataatattgacaaaata
gataaaaatgaggaagccttagtccctaaggacttacctgaaatctctgctgatagttgg
agtacgggaagtgcatttaaagacagtctaggagacaagctggaacctgttaaaattttg
attcctgaagttggaggggcaactaaaaagcaaaatgaatacacaggtgaaaaaagcagt
gattcacaaagctcaaatcaaagcataaagaaaaaaaatctgataagtgaaaaatttgga
catgtgacagcttatgacttaattaatagcagaataataaagaaaccaaagtctgcgttt
gaatttttcacacatgaatgtcgtccaaaattgataaatgataatccaaagaccagcatg
aatgacatcctgctgacaattgaagagcagtggaagaatttgaatgaagaggaaaaacag
aattatgaaatgaaagccactaaggaccaggagcggtacaacagagaggtcaagaaagcc
agtgcacagccaatgcaccgaccagcaaaggaggcagacaaacacaaacccaagctgaag
agttctgcatctgaccagcagaagcttgacaagatatttcacaaccagattgaaaagaag
gggaaagtggagcagcctgtgaaaatcgtgacagtgcctttttctttgagttgctgtaga
cgtcaccttcagagacaagcgagaaatgtttcagatgagcaggagcttttccttatccgt
cgtcagagttttcctgatgtctggatacttgctactgaaaaaaatgtaaagttgctgaat
ccatacagattggaggaggccctgctctgtaagagattattggtgaaccataagcttcca
gtagagagactggacaatccaattgttttaacagacagtcttattggtggatctcagtat
atggctgctctttataaaatgcagaagaattaccagagtttccatggatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgtttcggct
acagaaaatcatctggaagtagaagggatggcaaattgtctgccatattatggaatttct
gatttgaaagaaattctgcatgcagtagttaacagaaatgcaaaggaagtatatgaatgt
aggcctctcaaagtgataaattacttggagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgtgttcatggtcgacctttttttcatcacttaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa
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