Sylvia atricapilla (blackcap): 136364042
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Entry
136364042 CDS
T10263
Symbol
SMC3
Name
(RefSeq) structural maintenance of chromosomes protein 3 isoform X1
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati04110
Cell cycle
sati04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
136364042 (SMC3)
04114 Oocyte meiosis
136364042 (SMC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sati03036
]
136364042 (SMC3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sati00535
]
136364042 (SMC3)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
136364042 (SMC3)
Meiosis-specific proteins
Cohesin complex and associated proteins
136364042 (SMC3)
Proteoglycans [BR:
sati00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
136364042 (SMC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_23
AAA_29
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
136364042
NCBI-ProteinID:
XP_066179704
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All DBs
Position
8:complement(10146621..10170670)
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AA seq
1217 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSAKRETSGEKSRQLRDAQQDARDKMEEIERQVRELKTKISAMKEEKEQLSAERQEQIK
QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEER
GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
EDTEANKEKNLEQYSKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVLNGYHGIVMNNF
ECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAY
PETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELEAINKRVKDTLARSDDLDNSIDKTEAGIKELQKS
MERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
SLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSTESERG
SGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMIMELAEHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
ITAEMAKDFVEDDTTHG
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtacatcaagcaggtaatcattcagggctttcgaagctacagggaccaaaccattgtc
gacccattcagctccaaacacaatgtcattgtgggaagaaatggatctggaaaaagcaac
tttttttatgcaattcagtttgtcctcagtgatgagtttagtcatcttcgcccagagcag
agactggctttgttgcatgaaggtacaggtcctcgtgttatttcggcatttgtggagatt
atatttgacaattccgacaacaggttaccgattgataaagaggaagtctcgcttcgcaga
gtcattggagccaagaaggatcaatatttcttagacaagaaaatggtgacgaaaaatgat
gtcatgaatcttcttgaaagtgctggattttctcgaagtaatccctactatattgtcaaa
caaggaaagatcaatcagatggccacagctcctgactctcaaagactgaagttactgaga
gaagtagctggtaccagagtgtatgatgaacgtaaagaggagagtatttcactaatgaaa
gaaacagagggcaaacgagagaagatcaatgagttgttgaaatacattgaagagcgactg
catacgctagaagaggagaaagaagagctggcacagtaccagaaatgggataaaatgagg
agagcattagaatacaccatttataatcaggaacttaatgaaacccgagctaagcttgat
gagctttctgctaaacgagagacaagtggagaaaaatcgaggcagctgagagatgcacag
caagatgctagagataaaatggaggaaatagaacggcaagttcgagaactgaagacaaag
atttctgcaatgaaagaagagaaggagcaacttagtgctgaaagacaggagcagattaaa
cagaggactaaattagagctgaaggctaaagatctacaggacgaattagctggcaacagt
gagcaaaggaaaaggctgctaaaagagaggcaaaaacttcttgagaaaatcgaggagaag
cagaaagaattggcagaaacagagccaaaatttaacagcgtaaaagaaaaagaagagagg
ggaattgctagacttgcacaggctacacaagaaagaacagatctttatgcaaagcaaggt
cgagggagccagtttacttccaaagaggaaagagataaatggataaagaaagaactgaag
tctttagatcaagccatcaatgacaagaagcggcagattgcagctatacacaaggattta
gaggatacagaggcaaacaaggagaaaaacttggaacagtacagtaaactggaccaggat
cttaatgaagtgaaggctcgcgttgaagaattggacagaaaatactatgaagtgaaaaat
aaaaaggatgaactacagagtgaaagaaattatctatggagagaagagaatgcagaacag
caagctcttgctgcaaagagggaggatctagaaaagaagcaacagcttctcagagcagca
acaggaaaggccattttgaatggaatagacagcataaacaaagtcttggagcacttccgt
cgcaaaggcatcaaccagcatgtcctgaatggctatcatggaattgtcatgaataacttt
gagtgtgaaccagcattctacacctgtgttgaagtcactgcagggaacaggttgttttat
cacattgtggattctgacgaggtcagtacaaaaatcctaatggaatttaacaaaatgaac
cttcctggagaagttacgttcctccctctgaacaagctggatgttagagatactgcttat
cctgagactaatgatgctattcctatgatcagtaaactgaggtacaatccaagatttgat
aaagctttcaaacatgtttttgggaagactttaatttgtcgtagcatggaagtgtctacc
cagctggccagagctttcacaatggattgtatcactctggaaggtgatcaagtcagccat
cgaggtgccttgactgggggttattacgacaccaggaagtctcggcttgaattgcaaaaa
gatgttagaaaagcagaagaagaacttggtgaactcgaagcaaagcttaatgagaactta
cgtagaaacattgaaaggattaataatgagattgaccagctaatgaatcaaatgcagcaa
attgaaacacagcagagaaagttcaaagcctctcgagacagtattttgtcagagatgaag
atgctgaaggagaaacggcagcagtctgaaaagacatttatgcctaagcaacgtagcttg
cagagcctggaggcaagtttacatgctatggagtcaactagggaatcattaaaagcagaa
ctggggacagatttgttgtctcagctcagtcttgaagatcagaagcgtgtggatgctctt
aatgatgaaattcgacaactacagcaagaaaacagacagcttttgaatgagaggattaaa
ttagaaggcattatcacaagagttgaaacatatctcaatgagaatctgagaaaacgctta
gaccaagtggaacaagaactgaatgagcttcgagaaacagaaggtggcacagttcttact
gccacaacatcagaacttgaggctatcaacaaacgagtgaaggatacactggcacggtca
gatgatctggataattctattgacaaaacagaagcaggaattaaagaacttcagaagagc
atggaacgctggaagaacatggaaaaggagcatatggatgccattaaccatgatacaaaa
gagcttgaaaaaatgacaaacaggcaaggcatgcttctcaagaagaaagaggaatgcatg
aagaaaatacgagagttgggttcacttccacaggaggcttttgagaagtatcagacttta
agtttaaagcagttattccgcaagctggagcagtgcaatactgaactgaagaaatacagt
catgttaataagaaagctttagatcagtttgtgaatttctcagagcagaaggaaaaattg
ataaaaaggcaagaggaactggacaggggctacaaatccatcatggagctgatgaatgtc
cttgagctcaggaaatatgaggctattcagctgactttcaaacaggtgtcaaaaaatttc
agtgaagtattccaaaagttagtacctggtggcaaggccacattagtgatgaagaaagga
gatgtggagggcagtcagtcccaggatgaaggtgaaggcagcactgagagcgaaagggga
tctggatctcagagcagtgttccatctgtagatcagttcactggagttggcataagggta
tcattcacagggaagcagggtgaaatgagagaaatgcagcaactttcaggtggacagaaa
tctttagtggccctggccctaatatttgccatccagaaatgtgatccagctccattttac
ttgtttgatgaaattgaccaagccttggatgctcagcatagaaaagctgtgtcagatatg
attatggaactagccgaacatgctcagtttattacaacaacttttaggccagaactgctt
gagtcagctgacaagttctatggtgtaaaattcagaaacaaggtcagtcatattgatgtg
atcacagcagaaatggccaaagactttgtagaagatgacaccacgcatggttaa
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