Sylvia atricapilla (blackcap): 136364052
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Entry
136364052 CDS
T10263
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
sati Sylvia atricapilla (blackcap)
Brite
Ribosome biogenesis [BR:
sati03009
]
Eukaryotic type
90S particles
Other 90S particles
136364052 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136364052
NCBI-ProteinID:
XP_066179726
LinkDB
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Position
8:complement(12636839..12662379)
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AA seq
1830 aa
AA seq
DB search
MASMEENFPRGGVQKKPAEGKTPKPKSERDNLFDVQHEEKSQKRKRIQKDQGKQKRFKAD
KTAAVKDNVTNIGPLTIEALSEGMLLLGCIKEVTDYELALSLPNGLSGFVPVTQISDAYS
KLLTKQVAQGELLEELNSLPDIFSPGTLVRCIVTSIEKRDDGSRSVKLSIDPKKVNRGLS
STALAAGMLLSGSVVSVEDHGYIIDIGVTGTHAFLPHQKAKNYIKAAKKGPDLKIGQNLN
CLIVEVKNEGRVVCLSIDRSEVAASIATERQNWALSNLLPGLVVKARVQKVDPLGMKVIF
LSYFTGIVDFMHMDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHAGGAPRQLP
GQRLGAVLEQATVKAFYKQFGAVFELDDGTLAFARLKHLSKTRKSFKPGAFKEGCKHKCR
IIDYSLMDEMCIVSLKHQIIEAQFLQYQDIHSGDVVQGKVLSLKPIGMKVKLAHGIRGLV
PSLHLSDVILKQPEKKYNIGDEVKCRVLECNPGGKKLILTLKKSLIQSKLPVLSNYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSELISCPDKVFYEGQVLKVMVLKCE
PEQERLLLSFRLSSKPGPEDKWKCTPKEKQKYQIGEVVDVKILKKKDNGLEVSILEDEDN
VVGWIPTLHLSDFVATSKLLWHCLQEGDVLPRVMYLSDRGERIILSRKSAVISAVQEEQV
VRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTV
IAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLYQYFKELKEIRNLSRRGEPSICEL
VPGKRVHLVVQDVREDGSALFSSSSVTGLTVTATRYHLGDKNIAPGEKRKAFVLHVDAVT
SKVYVSLREELLKQGPKRRLRENSQCSAVVQHITEHFAIVSVLETGQLAAVPIACHFNDT
FRFDSEKLRVGQTISVTLKAAKENDHGVLLAVQGPAKNNXFVRVRNESETALEEMLPAVK
HSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTSTLKAGQKVTA
RVIGGRDVNTHRSLPITHPHFTQSIPELSIRPSEKEGEFTAMLNLKEESSLKKLGLYNVG
QTVTCFVKKYNMLKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFKNGQAISATVTG
TDASEXNLCLSLTGIQSLEQDTISVGMVTKVTPHIGLTIALPGGKTGKVSIFHLNDTYTE
DPVGNFKVGKIVRCYILSNENGKIQLSLRQSRLNPKINSKVEDIEITSIKDVKKGQLVRG
YVKSITPSGVFFGLSTSLMGRILFQNVSPYFVQKHSLYXKYLPEGKLLTAKVLGVNRKEQ
HIELSLLPEDTGMPSVLPESLGLPPYGAEEEKRQTDDEEKREKPKLRTKRRRGSYESGQE
VKPKKKKICPADENDSGIEVYYREEEEDDQEEETAKKKSKERKPGEAPRLQVSMASPXDE
DNAMDIPVLDQKEESSESEEEEDKQSKLKKRTKKEKELEKQKKEKELCKVEAALMDPGRQ
PQSADDFDRLVLGSPNSSILWXQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW
VALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEDLYHTMLKRF
RQXKSVWLKYXSFLLKQGQAEATHRLXERALKALPTKEHVDVISRFAQLEFHSGDTEHAK
ALFESTXSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYLDY
ENKFGTAESVMAVKRAALEYVETKSSLADT
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcgttcagaagaaacctgcagaagga
aaaacacccaagccaaagtcggagcgggacaatttgtttgacgttcaacatgaagaaaaa
tcccagaaaagaaaaaggatccagaaggatcaaggaaagcagaaaaggttcaaggcagac
aaaacagctgctgttaaagacaatgttacgaatattggaccactcacaattgaggcactc
agtgaggggatgctgctccttggctgtataaaagaagtcactgactatgagctcgccctc
agtttgcccaacggcctctccggatttgtgccagtcacacagatcagtgatgcctacagc
aaactgctgaccaagcaggtggcccaaggagaactcctggaggagttgaattcgctccca
gacatattttctccagggacactggtcaggtgcatcgtgaccagcattgagaaacgtgac
gatggaagtcgcagtgtcaagttatcaattgaccccaagaaggtcaacaggggcctgagc
tctacagcactagcagcaggcatgttgctctctggctctgtggtgagtgtggaagaccat
ggctacatcatagatattggtgttactggaactcatgctttcctgcctcatcagaaagcc
aaaaattacatcaaagcagccaaaaaagggcctgacctaaaaataggccagaacctgaac
tgcctcattgtggaagtgaagaatgagggcagggtggtctgtttgtccattgatcgatcg
gaggtggctgcatccattgccacagagcgacagaactgggcactctcgaatttattgcca
gggctggtagtgaaagctcgagtgcagaaggtggacccacttgggatgaaagtgatattt
ctgtcttacttcactggcattgtggatttcatgcacatggacccagaaaaatccatgagc
tattctccagatcaagtggtgaaggcctgtgtgctgtctgtacaccccacgtccagggcg
gtgcggctcacgctgcgcccgcccttcctgcacgccgggggagccccacgccagctgccc
ggccagcgcctgggggccgtgctggagcaggccacggtgaaagccttctacaagcagttt
ggggctgtctttgagcttgacgatggcactcttgcatttgcacggttgaaacatctttca
aaaaccagaaaatcctttaaacctggggcatttaaggaaggttgcaaacataaatgtcgg
atcattgactacagcctgatggatgagatgtgtattgtatctctgaagcatcagattatt
gaagcacagtttctgcaatatcaggatatccactcgggtgatgtggtgcagggcaaagtg
ctctctctaaaacccattgggatgaaggtgaagctggctcatgggattagaggacttgtg
ccatctctccatctctctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaagtgtcgggtgctagagtgcaatcctggaggaaagaagctgatccttact
ctaaagaaaagtctcatccaatcaaagcttccagtcctctcaaattatgaagatgcaaaa
ccaggcctgatcacacatggctttgtagtgtgtgcaagggagtttggctgcattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagaatgagctgggctcagaactcatatct
tgtccagataaagtcttctatgaaggccaggttcttaaagtaatggtcttaaaatgtgag
cctgagcaagaaagactcctgttgtccttcagattatcaagcaagcctggccctgaggac
aaatggaaatgtactcctaaggagaaacagaaataccaaataggagaggtagttgatgtg
aaaatattgaagaagaaagataatgggttagaagtttccatcttagaagatgaagacaat
gtggtaggctggatccccacactgcacctctctgactttgttgctacctccaagctcctg
tggcactgtcttcaagagggagatgtcctgcccagagttatgtatctgagtgacagggga
gagcgcattatcttgagtagaaagtctgcagtgatttctgctgtgcaggaggagcaggtt
gtgagaagcttctctgaaatccagcctggcatgctgttgactggttatgtgaggaatgtg
atgccctttggagtgtttgtggagttcccttttggtgtgacaggactggcacctaaagtg
agcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtgggacagactgtg
attgcaaaggtgatgagcattgacgaggagaagcagcgtgtgctcctcaatctgaaggtg
tctgagtgcagctcaggagattctgctgcagagagctttgccctcctgtatcaatatttc
aaggagctgaaagaaatcaggaacttgtcgaggagaggagagcctagcatttgtgagttg
gtgcctgggaagagggtgcatctggtggtgcaggatgtgagggaggatggctcagcactg
ttcagtagcagctctgtcacaggcttgactgtaactgccacccgttaccatttgggagac
aaaaatattgctcctggtgagaaaaggaaggcatttgttcttcatgtggatgctgtcacg
tctaaggtgtatgtttctcttcgggaagaactgttaaagcaaggacccaagcggcggctc
cgagagaactcgcagtgctctgcggtggtgcagcacatcacagagcactttgccatcgtg
tctgtgctggagacaggccagctggcagctgtccccatcgcctgccacttcaacgacacc
ttccgcttcgactcggagaaactgagggtgggacagacaatctctgtgaccttaaaagca
gcgaaggagaacgaccacggagtcttgttagcagtacaaggcccagccaagaataatngt
tttgtaagggtgcggaacgagtcggagacagcattagaggagatgcttcctgctgtgaaa
cactcgctgtccccgggggatgttgtcactggtactgttaaatctgtcaaacctacccac
gtcactgttgccattgatgacaagctgacaggctcaatccatgcatcccggattctggat
gaagtgcccataggctcttttccaacttcgactctgaaagctggacagaaagtgactgct
cgagtcattggaggcagagatgtgaatactcacaggtccctgccaatcacccatccacac
ttcacacaatccattccagagctcagcattcgaccaagtgaaaaagaaggggaattcaca
gcaatgctgaaccttaaagaagaaagttcccttaagaaacttggactctacaatgttggg
caaacagtcacctgttttgtaaagaagtataacatgctcaaaaattggctggaggtagaa
gtcgcccctgacattcgaggaagagttcctcacctgctgctgtctctgaacaccaaggtc
ttaaaacatccagaaaagagctttaagaatggccaggcaatatcagccacagtgactgga
acagatgccagtgaangaaacctctgcttgtcactcacaggaattcagtcactagagcag
gacaccatctctgtaggcatggtaacaaaggtgactccacacattggtctgaccattgca
ctgccaggtgggaagactggcaaagtcagcatctttcacctgaatgatacttacacagag
gatcctgtggggaacttcaaagttggcaagattgtcaggtgttacatcctctccaatgag
aatggtaaaatccagttatctctccggcaatcccggctaaatccaaagataaacagcaaa
gtggaggatattgaaataacaagcatcaaggatgttaaaaaaggccagctagtgagaggc
tatgtcaaatcaatcactccatcaggtgtattctttggattgtccacttctctcatgggc
cgaatcctgttccagaatgtttccccatactttgtacagaaacattccttatatngaaag
taccttcctgaaggaaaactgctcactgccaaagtgcttggggtaaatcgaaaagaacaa
catattgagctctctctcctgcctgaggacactgggatgccaagtgttttgcctgaatcc
ctaggcctaccaccatatggagcagaggaagagaaaagacagacagatgatgaggaaaaa
agagagaagcctaagctgaggacaaaaaggagaagaggaagctatgaaagtggtcaggag
gtgaagccaaagaagaagaagatctgcccagcagatgaaaatgacagtggaattgaggtg
tattaccgtgaggaggaagaggatgaccaggaggaagagacagctaaaaagaaatctaag
gaaaggaagcctggtgaagctcccaggctgcaagtttccatggcttcacctnnggatgaa
gacaatgcaatggatatacctgtgttggatcagaaggaagagagctcagagagcgaggag
gaggaggataagcagtccaagctaaagaaacgaacaaagaaggagaaggagctggagaag
cagaagaaggagaaggagctttgcaaagtagaggcggctctgatggacccgggtcggcag
ccgcagtcggcagatgacttcgaccgcctggtgctgggcagtcccaacagctccatcctc
tggncgcagtacatggctttccacctccaggccacagagattgagaaggccagagctgtg
gcagagagagcacttaaaacaatcagtttcagggaagaacaggagaagctgaatgtgtgg
gtagctctgctgaacttggagaacatgtatggtactgaggagacactgatgaaggtcttt
gagagagcagttcaatacaatgaacctctgaaagtctttcagcatctgtgtgacatctat
gccagttctgagaagtacaagcaagcagaagacttgtaccacacaatgctgaagcgtttc
cgtcagnagaagtctgtgtggctgaagtacngctctttcctcctgaagcaaggccaggct
gaggctacacacaggcttncggagcgtgctctcaaggctctgcccaccaaagaacatgtg
gatgttatttcaaggtttgcacagctggagttccattctggggacacagaacatgccaag
gccctctttgagagcaccntcagcagctatcccaagcggacagacatttggtccatctac
atggacatcatgatcaagcatggcagccagaaggaagtacgagacatctttgagagggtc
atacacctgagcttggcaccaaagaagatgaaattcttcttcaaacgctacctggattat
gagaataaatttggaacagcagaaagtgtcatggctgttaaaagagcagcgcttgagtat
gtggagaccaagagttcccttgctgacacctga
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