Sylvia atricapilla (blackcap): 136364201
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Entry
136364201 CDS
T10263
Symbol
ERCC6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
136364201 (ERCC6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sati03036
]
136364201 (ERCC6)
03400 DNA repair and recombination proteins [BR:
sati03400
]
136364201 (ERCC6)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
136364201 (ERCC6)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
136364201 (ERCC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
TFIIF_beta
DEAD
C6
Motif
Other DBs
NCBI-GeneID:
136364201
NCBI-ProteinID:
XP_066179987
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All DBs
Position
8:17834809..17876805
Genome browser
AA seq
1508 aa
AA seq
DB search
MRSFVSVDVLMIMCFSFVAFEQRMPTHKSHLPDSIQEQESATTSSNNCLHNNGDLGTEQE
NGICDNGVDNSVGIPSSDCQASTSTAVPLEVPRRGHPLLQINRQQIQSVSCSAHAAELKD
LGVDVYDQDVLEQGVIQQVDNAINEANKAAKIANASKEYESVLEDLRSCTTSLRHINKII
EELSPQAADNKNINRKLDSVKRQKYNKEQQLKKIKAKQKRLQGILGLTEFADEANEIENE
EDEEPGPSSLGSMLMPAQETEWAELIRTGQMTPFGTKIPQKPERKARQLRLNEASDFEKY
LADQAKLSSERRKLSRHKGAKKKAQAKNVQCVAPAAATKEKHGKALSKTDKRLKKHLREL
QKHALQIHSKARIPKEKKCLEAKNLRHEQEDDSGESEYVPDEELFDPEAAAAEEASSFAE
SDSDYELKSLSRKRKKFVKKSFKEGENDADFVPSSEEEEHTPGKHKVRRWRDDGDLDYYK
QRLRKWQKERLEGKEHQTAEELSEESDVEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHC
QQAGGILGDEMGLGKTIQIIAFLAGLSYSNMRTRGSNYRYQGLGPSVIVCPATVLHQWVK
EFHTWWPPFRVAVLHETGSYTKSKVKLIHEIASCHGILITSYSYIRLMQDNIHTYDWHYV
ILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFIFPGKLGTLPVF
MEQFSVPITMGGYCNASPVQVKTAYKCACVLRDTINPYLLRRMKADVKMSLSLPDKNEQV
LFCRLTEEQRQIYQNYINSKEVYQILNGDMQILLGLSTLRKICNHPDFVADSPRILKSVP
DAEAEDPNQFGYWKRSGKMIVVESLLKIWHKQGHRVLFFTQSRQMMQILEVFVRYRNYSY
LRMDGTTAVASRQPLVAKYNEDKSIFLFLLTTRVGGIGVNLVGADRVIIYDPDWNPSVDT
QARERAWRIGQKKEVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQNRFFKSNDLY
ELFTLNSPDVSQGTETSAIFAGTGSDVQVPKPSDNGTSKRDVHLAEGSSHKKIKSSYSTT
QMKDSSSKATEASEETKGNLEAFDQNSYTKDNAEAATDINSFNKSKEECLESDDKCMTQL
MPCNAGSSEDAECLTAVVAGEGPGAADDDARTDLSLTCDAAGSWEKQDAKTEDGQFDNNH
YKCISKTKHKVDMLSHESHKDKSKKKHHKDAKFEGKRIPHLVKQKQYRRENSEEQDSKKN
DDYVLQKLFKKSGVHSVMKHDAIMDASSADHVLEEAEASRVAQDALRALRLSRQQCLGAA
SGVPTWTGTSGFSGAPPGIKNRFGQKRNSMLLSSHSACASPAKKHKDGDTIKKQNIKKCN
SSEHFNGKSGESSSNALDSSSLLARMRARNHLVLPQQARTEGDENDQPAPAPVQGSTEYD
ELLVELRNFLAFQARVDGEASTRELLQEFESKLPAEHSCVFRELLRNICTFHRSPNGEGV
WRLKPEFR
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctttgtgtctgtggatgtccttatgataatgtgcttctcctttgttgccttc
gagcagaggatgccaacacacaagagtcacctgccagacagtattcaagaacaagagtct
gccactacttcaagcaataattgcctgcataacaacggggacttgggaactgaacaggaa
aatggcatttgtgacaatggtgtggataatagtgttggaattcccagctctgactgccag
gcttccacttccacggctgttcctttggaggtgcccagaagaggacatccccttttacag
atcaacaggcagcagattcagtctgtctcgtgtagtgcacatgctgctgagctcaaagat
ttaggagttgatgtctatgaccaggatgtgttggagcaaggagttattcagcaagtagat
aatgcaattaacgaggcgaataaagcggcaaaaatagctaatgcatcaaaagagtatgag
tcagtactggaggatttaagatcatgtacaacatctctgagacatataaataaaattatt
gaggaactttcacctcaagctgctgacaacaaaaatattaacagaaaactagattctgtg
aaacggcaaaaatataacaaggagcaacagctgaagaagataaaagcaaaacaaaaacgt
cttcaaggaatacttggtttaacagagtttgctgatgaagcaaatgagattgaaaatgag
gaagatgaagaacctggtccatcatcccttggcagtatgcttatgcctgctcaggaaaca
gagtgggcagagctcattcgaactggtcagatgactccatttggaactaaaatacctcag
aagccagagagaaaggcgcgacagttaagactaaatgaagcatctgattttgagaagtac
ttggcagaccaagctaagctgtcatctgaaagaaggaaattatcccgtcacaaaggagca
aagaagaaagcacaagccaaaaatgttcagtgtgtggctcctgcagctgccacaaaggaa
aaacatggtaaagccctctcaaaaacagataagcgtttaaaaaaacacttgagagagctt
cagaagcatgcccttcagattcattcaaaggccaggattccaaaggaaaagaaatgtctt
gaagccaagaatctcaggcatgaacaagaggatgatagtggggaatctgagtatgtacct
gatgaggagctctttgatccagaagcagcagcagcagaagaggcatcttcttttgctgag
agtgattctgattatgaacttaagagtttatcaagaaaaagaaaaaaatttgtgaagaag
agttttaaagaaggtgaaaatgatgctgactttgttccaagctctgaggaagaagagcat
acaccagggaagcacaaagtgagacgatggagagatgatggagatttggactattataaa
cagagactaaggaagtggcaaaaagaacgtttggagggcaaagaacatcaaacagctgag
gagctttctgaagaaagtgatgttgaatttgaagagggtttcaaagtaccaggatttctc
ttcaaaaagctttttaagtaccagcagacaggtgttaggtggctttgggaattgcactgc
cagcaggcaggaggaattctgggagatgagatgggattgggcaagaccattcagataatt
gccttcttggcaggtctgagctacagcaatatgaggactcgtggttcaaattacaggtac
cagggattgggtccatcagtgatcgtttgtccagctactgtgttgcatcagtgggtaaaa
gaattccacacttggtggcctccatttagagttgctgtactccatgaaactggctcttat
acaaagagtaaggtgaaattaattcatgaaattgcttcatgccatggaattttaattacg
tcttactcatacattcgactgatgcaggacaacatccacacgtatgattggcattatgtc
attctggatgagggtcacaaaatccggaatccaaatgctgcagtcacacttgcatgcaag
cagttccgcacaccccatcgaatcatcttgtctggctcccctatgcaaaataacctaaag
gagctctggtccctctttgactttatattcccaggaaaacttggaacactacctgtgttc
atggagcagttttctgtcccaataacaatgggaggatactgcaatgcctctcctgtccag
gtgaaaactgcatacaaatgtgcctgtgtgttacgagacaccataaacccctacttgctg
cgaagaatgaaggctgatgtaaaaatgagcctttcacttccagataaaaatgaacaggtc
ctcttttgccgtttgacagaggagcagcgtcaaatctatcaaaattatatcaactctaaa
gaagtttaccagattctcaatggagacatgcagatcctcttaggactatcaactttgaga
aagatttgcaatcaccctgacttcgttgctgatagtcccagaattttgaagagtgtgcca
gatgctgaagcagaggatccaaatcagtttggatattggaaacgttctggaaaaatgata
gtggtagaatccttgctgaaaatatggcacaagcaaggtcacagagtcctgttttttact
cagtcaagacagatgatgcagatacttgaagtttttgtgagatacagaaactattcctac
ctcaggatggatggcaccacagcagtagcttccagacagcctcttgtagcaaaatacaat
gaggacaaatctatatttctttttcttctaacaactcgtgttggtggcattggagttaac
ttggttggtgctgaccgggttattatttatgatcctgactggaatcccagtgtagacaca
caggctcgggaacgtgcttggagaataggccaaaagaaagaggtgactgtgtataggctg
ctcactgcaggtactattgaggagaagatataccacagacaaatcttcaaacagttttta
acaaacagagtgctgaaagaccctaagcagaatcgcttcttcaaatccaatgacctttat
gaactgtttactctgaacagccccgatgtgtctcaggggacagaaacaagtgcaattttt
gcaggtactggttcagatgttcaagtcccaaagccatctgataatggcacttctaaacgg
gatgtccatcttgcagaaggcagctcacacaagaagataaagtcttcctattccaccaca
caaatgaaagattcttcttctaaagcaacagaggcaagtgaggaaaccaagggaaacttg
gaggcctttgatcaaaatagctacacaaaagataatgcagaagctgctactgatataaat
tcattcaataaaagtaaggaggaatgcttggaaagtgatgacaaatgcatgacccagttg
atgccatgcaacgcagggtcctcagaggatgctgaatgtctgactgctgtggtggctggt
gaaggacctggagcagctgatgatgatgccaggacagatcttagccttacttgtgatgca
gctggctcttgggaaaagcaggatgctaaaactgaagatgggcaatttgataataaccat
tataagtgtatctcaaaaacaaagcacaaggtggatatgctgtcacatgagagccacaaa
gataagtctaagaagaaacatcacaaagatgccaaatttgaaggaaagcgcattcctcat
ctagtgaaacaaaagcaatacagaagggagaacagtgaagagcaagattcaaagaagaat
gatgactatgtcttgcagaaacttttcaaaaaatcaggggtacacagtgttatgaagcat
gatgccattatggatgcttccagtgcagatcatgtgctggaggaggcagaagccagcaga
gtggcccaggacgccttgagagccttgagactctctcgtcagcaatgtctaggagctgct
tctggggtgccaacttggacaggcacaagtggtttttcaggtgcaccaccaggaataaag
aatcggtttggtcaaaaaaggaactccatgctgctttcttcacattctgcttgtgcatca
cctgcaaagaagcacaaggatggagatacaataaagaaacaaaatataaagaagtgtaat
tccagtgagcacttcaatggaaaatctggagaatcgtcatccaatgctctggactcttca
tccttgttagctcgtatgagggcaagaaaccaccttgttttaccacagcaggccaggacc
gagggtgatgagaatgatcagccagcccccgccccagtgcagggatcgacagaatacgat
gagctgctggtggagctgcggaacttcctggcattccaggcccgtgtggatggcgaggcc
agcacccgggaattgctgcaggaattcgagtccaaactgcctgcagagcactcctgtgtc
ttcagagaactgctccgcaacatctgcaccttccacaggagcccaaacggggaaggggtc
tggaggctgaagccagaattccggtga
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integrated database retrieval system
