Sylvia atricapilla (blackcap): 136364423
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Entry
136364423 CDS
T10263
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sati00536
]
136364423 (COL13A1)
Glycosaminoglycan binding proteins [BR:
sati00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136364423 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
136364423
NCBI-ProteinID:
XP_066180450
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Position
8:33857004..33913158
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AA seq
604 aa
AA seq
DB search
MGIPGRPGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQKGEMGAAGPR
GEPGLPGQKGEKGQCAEYSHREYLSTTLAALRSNQILTLKGEQGQAGIQGPPGPPGPPGP
AGPAGPEGIPGRPGPIGPPGRVGEPGKPGRDGKGLPGPPGPKGDAGIQGYPGRKGERGMP
GLPGRHGSKGAPGMAAAGMKGEPGTPGEKGEKGRAGDPGLPGPKGEKGIAENALMGAKGE
PGPPGLPGPPGPKGEAGDIGQPGAAGSQGEKGERGSPGDQGPMGPRGPKGEPGKDEMMDY
DGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPGEMG
PPGPHGLPGKDGPPGIKGEPGHAGIRGEKGDKGEPGQAGSPGLDGPTGEKGEQGDQGIPG
PSGLPGPIGLPGLTGEKGEPGERGDKGNPGESISGPPGPQGPPGPPGLQGVPGPKGEAGI
DGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGDPGV
AGPMGPAGLPGLQGLPGDKGVRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQG
CWNK
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgggaatccctgggcggccgggtgctccaggagaagctggcatgtctatcatcgggccc
cgtggtccacccggacagcctggaacaagaggttttcctggattcccgggccctattggc
ttggatggcaaaccgggccatcctggacagaagggagagatgggtgctgcaggtcccagg
ggagaacccggacttccaggacaaaaaggagagaagggtcagtgtgcagaatactcgcac
agggaatacctaagcaccacacttgcagccctgcgctctaaccagatccttacgctgaag
ggtgaacaaggacaagcagggatccaaggtcccccggggccccctggtccaccagggcct
gctggaccagctggacctgaaggaatcccaggacgtcctgggccaattggaccccctggc
agagtgggagaacccggaaagcctggcagagatggaaagggcttacctgggcctcctgga
ccaaagggagatgctgggattcaaggataccctggcagaaagggggagagaggcatgcca
gggctgccaggaagacatggctctaagggcgctcctgggatggccgccgcagggatgaag
ggcgagcctgggactccaggagaaaagggtgagaaggggcgagctggtgaccctggactc
cctggcccaaagggagagaagggaattgctgagaatgccttgatgggagctaaaggagaa
cctggccctccaggtctgcctggaccccctggaccaaagggagaagctggtgacattggt
cagcctggtgctgcaggatcacagggagaaaagggggagcgtggttcaccaggagaccag
ggacccatgggcccaaggggccccaaaggagagcctgggaaggatgaaatgatggactat
gatgggaacatcagtgaagctctccaggaaatacgaactttggccttgatgggaccccca
ggacgtccaggtgtggctgggcctccagggccaccaggacagaagggtgaaattggcttg
ccaggtcctccaggccatgacggagaaaagggaccacgtggcaagcctggagaaatgggc
ccccctggccctcacggactgccaggaaaggatggacctcctggaataaagggagagcca
ggccatgctgggatcagaggagaaaagggcgataagggagagccaggacaagcgggctca
ccgggtctagatggacccactggagagaaaggcgaacaaggtgaccaagggataccagga
ccatcaggattgccagggcccattggactgccaggattgacaggagagaagggtgagcct
ggggagcgtggagacaaaggaaatccaggagaatcgatatctgggccccctggaccccaa
ggccctccaggacctccaggtcttcagggggttcctggacctaagggggaagcagggatt
gatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagagggccactggga
ttacccggtgcttcaggtttagacggcaggcctggaccaccgggtattccaggaccaatt
ggggtttcgggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagtt
gcaggaccaatggggccagcagggcttcctggtttacaaggtctacctggtgacaaagga
gtccggggggagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaa
ggagcacctggattagatgcaccctgtccgttgggggaagatggccttccagttcaaggc
tgctggaataagtga
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