Sylvia atricapilla (blackcap): 136364632
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Entry
136364632 CDS
T10263
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136364632 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sati03041
]
136364632 (PRPF38B)
Spliceosome [BR:
sati03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136364632 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
136364632 (PRPF38B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
136364632
NCBI-ProteinID:
XP_066180685
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All DBs
Position
9:1910755..1919137
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AA seq
546 aa
AA seq
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MANNSPAVANCQGQQAAQHPPGAGPPVQQPLQSGGPKPAASGKQGNVLPLWGNEKTMNLN
PMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGV
GTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFE
SFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKAIDQQIKSRPRK
IKKDGKEGMEEIDRHAERRRSRSPRPRSITPRRSPRRSRSRSHHREGHGSSSFDRELERE
RERQRLEREAKEREKERRRSRSTDRSLERRRSRSRDRYRSRSRSRDRKGDRRDREREREK
ENERSRKKDRDYDKERGSEREKDRSRERSKERKSKGDTEERRHKDDKDEKKHRDDKRDSK
KERKHSRSRSRERKHRSRSRSRNTGKRSRSRSKEKSSKHKNENKEKSNKRSRSRSRGRTD
SVEKSRKRDQSPSKEKSRKRSRSKERSHRHDHSDSKDHSDKHDRRRSQSTERESQEKQQK
NKDETV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacagccccgcggtggccaactgccaggggcagcaggcggcccagcacccg
cccggcgccggcccgcccgtgcagcagccgctgcagagcgggggccccaagccggcggcc
tcgggcaagcagggcaacgtgctgccgctgtggggcaacgaaaagaccatgaacctgaac
cccatgatcctcaccaacatcctctcgtcgccctacttcaaggtgcagctctacgagctc
aagacctaccacgaagtggtggacgagatctatttcaaggtcacacatgttgaaccatgg
gaaaagggcagcagaaaaacagcaggccagacagggatgtgtggaggggtgcgtggtgtt
ggaactggaggaattgtgtctactgctttttgcctgctctacaaattatttacactgaag
ctcactcgtaagcaagtgatgggtcttatcactcatacagactccccatatattagggct
cttggatttatgtatattaggtacacacagccacctacagatctatgggactggtttgaa
tcctttcttgatgatgaagaggacctggatgtgaaggcaggtgggggttgcgttatgacc
ataggggagatgcttcgttccttcctcactaagctggaatggttttccacgttgtttcca
agaattcctgtgccagtccagaaagccattgaccagcaaattaaaagcagacctagaaaa
atcaagaaagatggaaaggaggggatggaagaaatagaccggcatgcagaacgtagacgt
tcaaggtctccaagaccaagatccatcactccaaggaggtctcccagaagatccagaagc
agaagtcaccatcgggaaggccatggatcatctagttttgatagagaactagaaagagaa
cgagaacggcagagattggaacgggaagcaaaggagagagaaaaagaaagacggagatct
cgaagcaccgaccgctcactggaacggaggcggagcagaagcagggacagatacaggagc
cggagtcgaagtcgtgacaggaaaggagatagaagagacagggagagggagcgagagaaa
gaaaatgagcggagtcggaaaaaagatagagattacgataaggaaagaggtagtgagaga
gaaaaagatcgatctagagagaggtcgaaagaaaggaaaagtaagggtgacacagaggag
agaagacacaaggacgacaaagacgagaagaaacaccgcgacgacaagagggattccaaa
aaagagagaaagcacagtagaagtcgaagccgggaaagaaagcataggagtaggagccga
agcaggaacacaggtaagcgcagcagaagcaggagcaaagaaaaatcaagtaaacataaa
aatgaaaataaagagaagtcaaataaacggagtagaagcagaagcagaggaagaacagat
agtgttgagaagtccagaaaacgagatcagagtcccagcaaagaaaaatctaggaagcgt
agcagaagcaaagaacgttcccacagacatgatcacagtgatagcaaggaccattctgac
aaacacgatcgtcgaaggagccaaagtacagaacgagagagccaagaaaagcaacagaaa
aacaaagatgagactgtgtga
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