KEGG   Sylvia atricapilla (blackcap): 136364707
Entry
136364707         CDS       T10263                                 
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
sati  Sylvia atricapilla (blackcap)
Pathway
sati04115  p53 signaling pathway
sati04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sati00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    136364707 (COP1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    136364707 (COP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sati04121]
    136364707 (COP1)
Enzymes [BR:sati01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     136364707 (COP1)
Ubiquitin system [BR:sati04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    136364707 (COP1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     136364707 (COP1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR3_2nd zf-C3HC4_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C zf-C3HC4 Beta-prop_NOL10_N zf-RING_2 zf-RING_UBOX Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 zf-C3HC4_3 ASA1 zf-RING_5 DSE1_N Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 Beta-prop_Aladin WD40_RFWD3 RING_XB3-XBAT31 WD40_like Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WD40_MABP1-WDR62_1st PAC11 Beta-prop_IFT140_1st Beta-prop_DCAF12 zf-rbx1 Beta-prop_WDR41 zf-RING_10 zf_C2H2_10 RING_ZNF598 zf-RING_11 Sina_RING
Other DBs
NCBI-GeneID: 136364707
NCBI-ProteinID: XP_066180806
LinkDB
Position
9:complement(8018375..8142558)
AA seq 704 aa
MSGSRPPHPAVPPAATPASSSSSSSSSSSSSAAMAPGSSSSGGAAARPVLVAAAVSGSGP
GLPRLAAAAARPGGSSAAPGGGGRKRPLLTPLCNGLINSYEDKSNDFVCPICFDMIEEAY
MTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRSEEKRLKL
DHSVSSTNGHRWQIIQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEF
LKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPSHSSIID
STEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMTRVSDDSRTTS
QLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKV
YEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSK
VYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSS
RYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNV
GKPHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVL
DKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgtcgggcagccgcccgccgcaccccgctgtgccgcccgccgccacaccggcctcctct
tcctcctcttcctcctcatcctcctcctcttcggcggccatggcccccggctcgtcctcc
tcgggcggcgcggcggcgcggcccgtgctggtggcggccgccgtgtcggggtcgggcccg
gggctgccccggctggcggcggcggcggcgcggcccggcggctcctccgcggcgccgggg
ggcggcggcaggaagaggccgctgctcaccccgctctgcaacgggctcattaactcctac
gaggacaagagcaacgacttcgtgtgccccatctgttttgatatgattgaagaagcctac
atgacgaaatgtggacacagcttctgctataaatgtattcaccagagcctggaggacaat
aacagatgtcccaaatgcaactatgttgtggacaacattgatcatctttatcccaacttc
ttagttaatgaattaattcttaaacagaagcaaagatctgaggagaaaagactcaaactg
gaccattcagtgagtagcaccaatggccacaggtggcagataattcaagatttgttggga
actgatcaagacaatcttgacttagccaatgtcaacctgatgctggagctgctggtgcaa
aagaagaagcagttggaagcagaatcccatgctgcccaattgcagatccttatggaattt
cttaaagtagccaggagaaacaaacgagagcaattggagcagatccagaaggagctaagt
gttctggaagaagatattaaacgggtagaggagatgagtggcctgtactccccggtcagt
gaggacagcacagtgccacagtttgaggctccctcaccttcacacagtagtattatcgac
tccaccgagtatagccagcctccaggcttcagtggcagttctcagaccaaaaagcagccg
tggtacaacagcacgctggcctcacgacgcaagcgcctcacagctcattttgaggacctc
gagcagtgctatttttccaccaggatgacacgtgtctcagatgacagcagaaccaccagc
cagctggatgagtttcaggagtgtctatccaagttcacacgctacaattcagtccggccg
ctggcaacgctgtcctacgccagtgacctctacaatggctccagcatagtatccagtatt
gagtttgaccgagactgtgactactttgccatcgctggagtgacaaagaagattaaagtc
tatgagtatggtacagtcattcaggatgcagtggatattcactaccctgagaatgaaatg
acctgtaattccaaaatcagctgtatcagctggagtagttaccacaagaacctgctagcc
agcagtgactatgaaggcaccgtcatcctttgggatggattcacaggacagagatccaag
gtctatcaggagcatgagaaaaggtgctggagtgttgactttaacttgatggaccctaag
ctattggcttcaggctctgatgatgccaaagtgaaactgtggtctaccaacttggacaac
tcagttgcaagcattgaggccaaggccaacgtgtgttgtgtcaaattcagcccatcttct
aggtatcacctagcttttggctgtgcagatcactgtgttcactactacgaccttcgcaac
actaagcagcccatcatggtgttcaaagggcaccgcaaggcagtctcctatgcaaaattc
gtcagcggggaggaaatcgtctctgcgtcaacagacagccagctgaagctgtggaacgta
gggaagcctcactgcttgcgctccttcaagggtcacatcaatgagaagaacttcgtaggg
ctggcgtccaatggagactacattgcctgtggaagtgaaaataattccctttacttatac
tataagggcctctcaaagacactgctgacgttcaagtttgatacagtcaaaagtgtcctg
gacaaggaccggaaagaagacgacacaaatgagtttgtgagcgctgtgtgctggagggca
cttccagatggggagtccaacgtgcttattgctgctaacagtcagggtacaattaaggta
ctggagctggtatga

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