Sylvia atricapilla (blackcap): 136366524
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Entry
136366524 CDS
T10263
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136366524 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136366524 (EDC4)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136366524 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
136366524 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WDR55
Cap4_nuclease
Motif
Other DBs
NCBI-GeneID:
136366524
NCBI-ProteinID:
XP_066183725
LinkDB
All DBs
Position
12:7228864..7261465
Genome browser
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGPAL
AKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDNEENGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHEGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMNIPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EETDNLSVEGAQGSGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPSHGSH
EEFAFPDHMADLGTEGLGSEKESVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPSGLPGEVLEPGHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGYGAKAS
AQRLPVKDWKVKASPRASPKLKRKGKKDDGDMNQSPRSSNNQVTPEFQDELMCILRSQQR
ELSELRQNQMELLQRLTDHLDAIQSSLMGHMERVIDSQQEQEQRRLDRVLMEGQQRNGQL
QEHLSQQLSQSLSTAVCSRLERTIRDEMKKTVPQCISKSMDPTVSQLSNTIAAKLTAVEG
TLKENITKLVKSKNLTDSVVRATADSLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKVREQEVRDPLVNQLRQLISSFQSTTEQLASTIAASVHAE
VQHQLHIIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
PLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacccagcacctgcgggacatcctc
aagctggaccggccgggaggttcagtgaatgagaaccagagaccgtcgaattcgtataac
ggggacctgaatgggctgctggtgcctgatccccttgggagcggagatggacccgctttg
gccaagcccgtgcatcgcagcatctccctaggagccctgcaggagaaacaagtcatctgc
ctttctggtgatgacagctccacatgcttagtgatatcagcaaaagatgtggagatagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cctgttgctagatatgactgggagcagaaatactattatggcaatttgatagctgtttca
aactcttacctggcttatgccattagagctgccagcaatggctctgctatggtgcgggtg
ttgagtgtcagcactgctgagcggaccttgctgaagggattcaccggaggtgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
ttcgtctggcgcctggctatggataaagaaaaaatccaagaggagatcttggttaacatc
aagcgacctgacaataccccactgaacaccttccgaagaatcatctggtgccctttcatc
ccggatgataacgaggagaacggggaagagggaagtcagaccttggcgttgttacatgag
gacagggcagaggtgtgggatttggacatcatccgaaccaacaacagctcctggccggtg
gaagtgcctgatattaaagaaggttttattgtggtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgagggacaggatgagccaagatgtcttcatgagtggaaa
ccccatgaaggtagacctctttcctgcctgctcttttgtgacaaccataaaaaacaagac
ccagaagttcccttctggaggtttctcatcacaggagcagatcagaacagagaactgaag
atgtggtgcacggtgtcttggacctgtttgcagactgttcgcttttctcctgacatcttc
agctccatgaatattcctcccagcctgaaagtctgcctggacctctctgctgaatatctg
atactgagtgatgtgcagagaaaagtcttgtatgtgatggagttgatgcagaaccaagag
gaggggaaggcttacttcagctccatctcagagttcctccttacccacccagtgctgagc
tttggcatccaggctgtgagccgctgccggctaaggcacaccgaggtgctcccagcagag
gaggaaactgacaacttgagtgtagaaggtgctcagggctctggagctgttgaatcagca
gcaggtgtgctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatt
aggttccagcctcttcatagccctgacacaagtgcttccatgccttcccatggctctcat
gaagaatttgcctttccagaccacatggctgatctgggcacagaagggctgggatcagag
aaggagtctgtgcacggctcccagccagacctgcggcgtatcgctgatctgcctgtgcca
gcagatttcctttctctctccaatgatgccaaacccaagctgatgactccagatgcattc
atgacaccaagtacttctcttcagcagatcgccgtctctccaggcagcagtgtcagttcc
ctgactgcagtgacagccatgagcagcacttctgtcacagatgcctctctgcccagagca
tcagaagacttgactgtgagccccaagatgcagctggacaccagcctcacactgagcagc
agcagcagcagtctccagaccagtcctaggagtcactctgttcttatcccaggcctccct
gacaaactgacaccaaaggcacctgttccagttgcaccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgcgagcgctcc
ccggatgtcatttcctctgcttccacagccatgtcccaggatatcccagagattgcctcc
gagaccctgcagcgcagctttgcggcggcgccgtccgggctccccggagaggtgctggag
cccgggcaccacgcagacagcatggcctcagctgcctcagccctgcacttgctgtctccc
aggaaccgccacaactctgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaacgctccgtccttactggagactgctttaactcaggaaaatgcctcttct
gacagtgttgtgagtcagccgtggccagcggctcctgacataacccgggaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcttaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagaacaaagtgac
cacgatgatgaagttgcaagcttggcttctacatcaggtggatatggtgccaaggcatct
gcgcagaggctgcctgtgaaggactggaaagtcaaggcatccccacgggcttccccaaag
ctaaagaggaagggcaagaaggatgacggggatatgaaccagtcaccaagatcatctaac
aatcaggtgacaccagagttccaggatgagctgatgtgcatcctgaggagccaacagcgg
gagctctcggagctgcggcagaaccagatggagctgctgcagaggctcacggatcacctc
gatgccatccagagctccctcatgggccacatggagagggtgatcgactcccagcaggag
caggagcagagaagactggaccgggtgctgatggaagggcagcagcgcaatgggcagctc
caggagcacctgtcccagcagctctcccagtccctgtccacagctgtgtgcagccgtctg
gagaggaccattcgggacgagatgaagaagacagtgccccagtgcatttccaagagcatg
gaccctactgtcagccagctcagtaatactattgctgccaagctcactgctgttgagggg
acactgaaagagaacattaccaagctagtgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgacagtctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctggaggctcacctgaagaacaag
aaggtacgagagcaggaggtgcgggacccgctggtgaaccagcttcggcagctcatcagc
agcttccagagcaccacggagcagctggcgtccaccatcgccgccagtgtccacgctgag
gtgcagcaccagctgcacatcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagcgagtcattaaaggagaagtgagcctggctatgaaggagcagcaagcagctgtcacc
tcgagcatcgtccaggcaatgcgctcggcggccgggacacccatcccctccactcacatg
gatttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggttctatatgtctgtgagact
gtggatactcagcaagtgtttggacagcatccatgcccactgtcccagcctgtgctgctc
tccctcattcagcagctctcctcagatctgggcacgcgtacggagctgaagttgaactac
ttggaggatgcagtgatgcacctggaccaaagtgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcaaaagctcttccagttcctccaggtggaaccccacaac
cctctgagcaaacctgcacgtcgcctgatgatcatgctgcagggcctggtcacccctggc
atgacctag
DBGET
integrated database retrieval system
