Sylvia atricapilla (blackcap): 136366550
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Entry
136366550 CDS
T10263
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sati03000
]
136366550 (CTCF)
03036 Chromosome and associated proteins [BR:
sati03036
]
136366550 (CTCF)
Transcription factors [BR:
sati03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
136366550 (CTCF)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
136366550 (CTCF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZN142
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
LIM
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
136366550
NCBI-ProteinID:
XP_066183776
LinkDB
All DBs
Position
12:7465851..7500107
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AA seq
728 aa
AA seq
DB search
MEGEAVDAIVEESETFIKGKERKTYQRRREGGQEDDACHIPPNQADGSEVVQDVSSGVQM
VMMDQLDPTLLQMKTEVMEGAVPQETEATVDDTQIITLQVVNMEEQPINLGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKGGLQEGEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELQPQEDPNWQKDPDYQPPAKKTKKNKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMVMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPTFVPAAFVCSKCGKTFTRRNTMARHADNCSGLDGGEGENGGETKKGKRGRKR
KMRSKKEDSSDSEGNAEPDLDDNEDEEETAVEIEAEPEVEQEAPAPPPSKKRRGRPPGKT
AAQPKQSQPAAIIQVEDQNTGEIENIIVEVKKEPDAETAEEEEEAQPAVVEAPNGDLTPE
MILSMMDR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaagcagtcgacgctattgtggaggaatcagaaactttcattaagggaaaa
gagaggaaaacctatcaaagacgccgtgaaggtggacaggaggatgatgcttgtcatata
ccacccaaccaagcagatggaagtgaagtggtgcaggatgtcagcagtggggtgcagatg
gtgatgatggatcagctagatccaactcttcttcaaatgaagaccgaagtaatggaaggg
gcagtgcctcaagaaactgaggctactgtagatgacacgcagatcataacacttcaggtt
gttaatatggaagagcagcctataaatcttggtgagcttcagctggtccaagtacctgta
ccagtgactgtacctgttgccaccacatctgtggaagaactgcagggagcttatgaaaat
gaggtttccaaaggaggcctgcaggaaggggagcccatgatctgtcacacccttccttta
ccagaaggcttccaagttgtgaaagtgggtgcaaatggtgaggtggagacactggaacaa
ggtgaacttcagccacaggaagatcccaactggcaaaaagatccagactatcagccacca
gccaaaaaaacaaagaaaaacaaaaagagtaagcttcgctacactgaggaaggcaaagat
gtggatgtctctgtatatgactttgaagaggagcagcaagagggtttgttgtccgaggtt
aatgcagaaaaggtggtgggcaatatgaagccaccaaaaccaacaaaaattaaaaagaaa
ggtgtaaagaagacattccagtgcgaactgtgcagttacacttgtccacgtcgttccaac
ttggaccgccacatgaaaagccacaccgatgaaagaccacacaagtgccatctttgtggc
agggctttccggacagtcacattgctgaggaaccacctcaacactcacacaggtactcgc
cctcacaaatgcccagactgcgacatggcctttgtgaccagtggagagttggttcggcat
cgccgctacaaacacacccacgagaaaccattcaaatgttccatgtgtgactatgccagt
gtggaggttagcaaattgaaacgccacatccgttctcacaccggggagcgcccgttccag
tgcagcctgtgcagctatgccagcagagacacctacaaactgaagaggcacatgaggacc
cactccggagagaagccatatgaatgttacatctgccatgctcgcttcactcagagcggt
accatgaagatgcacattttgcagaagcacacggagaatgtggccaaattccactgtcct
cactgtgatactgttatagcgagaaagagtgacctgggtgtccacttgcggaagcagcat
tcctacattgagcagggcaagaagtgtcgctactgtgacgctgtgttccatgagaggtat
gccctcatccagcatcaaaagtcccacaagaacgagaagcgcttcaagtgtgaccagtgt
gattatgcctgcagacaggagcggcacatggtcatgcacaaacggacccatactggagaa
aagccttatgcctgtagccattgtgataaaaccttccgccagaagcagctcctcgacatg
cacttcaagagataccatgatcccacctttgtccctgctgcctttgtctgctccaagtgt
ggcaaaacattcactcgcaggaacacaatggccagacatgctgataactgctctggccta
gatggtggggaaggagagaatggaggagagacaaagaaaggcaaacgtggccgaaagaga
aagatgcgttctaagaaagaagattcttctgatagtgagggaaatgctgaaccagatttg
gatgataatgaagatgaagaggagacagcagtagaaattgaagctgaaccagaagtagag
caagaggctcctgcgccacctcccagtaagaagagaagaggaagaccaccaggcaaaact
gctgcgcaaccaaaacaatcccagcctgcagcaatcattcaggttgaagaccagaacact
ggtgaaattgaaaatattatagttgaagtgaagaaagaacctgatgcagaaacagcagag
gaagaggaggaagctcagcctgctgtagtggaagctcccaatggagacctcacccctgag
atgattctcagcatgatggaccggtga
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