Sylvia atricapilla (blackcap): 136366692
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Entry
136366692 CDS
T10263
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sati03036
]
136366692 (TDRD12)
Enzymes [BR:
sati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
136366692 (TDRD12)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Gene silencing
piRNA pathway
136366692 (TDRD12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
136366692
NCBI-ProteinID:
XP_066184048
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All DBs
Position
12:16987649..17008977
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AA seq
1248 aa
AA seq
DB search
MEVLVLKVEDPSCFWIAVKECMPGILGEAAYKNLNAEMNRFYSSSKDADKIKGEKIEKGQ
VYVVFSEELRCWCRALVESVQCQTDGYQLRCFLVDYAKYCSVTSENIRILAGAFAKVPHR
AKKCRLYCTKPLTLRIDYCEDTAKIGPAKRWDTAAIQYFRKLLEEATEVKATIQAVEDKV
LEMFLFVTVKDDKICVNDDLVAKYFAHYKEAEGTAGSSSDDSDDGVSLNAKFVPVEFVGP
TFLARPKLPFGEEMSPHLGPGLDSCNFALGKTSQRLCTILNDSTVPVVSMVPDLPSKEDK
AVQTERLPQFFNSSSVQTHTIEGDQQSFQNVGKEKNFVFLSKKIEPSSVLETAPLFDGLK
KELAWNKFSGPTFTESYCWPPIALGCDVIAISDQGKDPLLYIPPVLTLLQLKSDYQALPN
RSGPQALILCPGWKKAQLVFDMLKTYRKGCRHLHLMLIILGQNKEAASQVEIRGCELVVT
TPYNLLRLLEYNTGLLCKLCHLVLDEIEVLLSDTAEQVFAILDCYKKATAQAQGNLPHQI
VAVGTQWNKHITPLITEFMNDPHIVITAVEEAAIFGNVQQVVQPCMNINRTAELLKILDF
TQRNLQKVLVFTDSVTDVEMIDKALKSNSVVSLKKHKESKCNAQCVLERWRKMHSSGTPA
VLVLTDDCLQSLGITDATCVIHFSFPSPGVFGQRLQSLSDNFGTGIKDSAGDQEHVKAKS
VILLTESSSCHVAGILPYLKHAEAEIPEELYDLTPRVLEYEEDKFSRPLCASLKTFGICR
NRTECPDRHQINSAVDMAQSIADEMIDTPERVTILPLYIVHATNYFGRIVKKQKDQYTVL
AKEMNDYFKVPGHRISVNNVEKSVFYGLCEGAVCHRVQVVETPAKDEENVCKITIKYIDE
GRTSQVNSDQLLHLPAKFQNLPPQAVEIVVCRVKPIDNEVEWNPKVTDHINHKIKGKLHH
AKVVHTLGKTVWVDPMVGVTNLAVMKMWINEYNIRSEILSTGLGTDNPQHVEEIQKLCRQ
IPVLDHAERLEHLPAKPETTVEKFRTSVQDLLVRSTKEGTAGLEEVPSPQDTSIQADSAE
SCNSSVTSPSNDAVQTREAEDSTVHQQKGCHPQIKWFQDNVTVTLKVQILRAADSKCEFS
REKVVFSAYSEGKFYVADLELYQSIIAEKSTCVIKDAEAVILLVKEKKGAWCKLLKNKNI
HVSLDFEHWEESEDERPFTVGSGKLSYPPAGSEDWFESSEDSDTESDE
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggaagttttggtattaaaggttgaagatccaagttgcttttggattgctgtgaaagaa
tgcatgcctggcatactcggcgaagctgcgtacaaaaacctgaatgctgagatgaatcgc
ttttatagcagctctaaagatgcagataaaataaaaggagagaagatagaaaaaggccag
gtctacgtggttttcagtgaggaactcaggtgctggtgtagggcactggtggagtcagtc
cagtgccagacggatggttaccagctcagatgtttccttgtggattatgccaagtactgc
tctgttacctcagagaatattcgaattttagcaggagcatttgcaaaggtcccacataga
gcaaagaagtgtcggctgtactgcacaaaaccactgacactgcgcattgactactgtgaa
gacactgccaaaataggaccagccaaaagatgggatactgctgctatccagtattttcga
aaacttcttgaagaggctactgaggttaaagccacaatacaggcagtagaagataaggtg
ttagagatgtttctttttgtgactgtaaaagatgacaagatctgtgttaatgatgatctg
gttgcaaagtactttgctcattacaaggaagctgaagggactgcagggagttcttcagat
gattctgatgatggagtgtccttaaatgccaagtttgttccagtggagtttgttggtcct
acgtttcttgccaggccaaagctgcccttcggggaggagatgtcaccacatcttgggcca
ggtcttgatagttgtaattttgctcttggaaagacatcccaaagattatgcaccattcta
aatgacagtactgtgcctgtggtcagcatggttccagatttgccttccaaggaagataaa
gcagttcaaacagagaggcttccgcagttctttaattccagttccgtccagacacacacc
attgaaggtgaccaacagagttttcaaaatgttgggaaagaaaaaaactttgtgttcctg
agcaagaaaattgaaccatcatcagttctggaaacagcaccactttttgatggtctgaaa
aaggaacttgcttggaacaagttttccggccctacctttactgaatcctactgttggcca
ccaatagctttgggatgtgatgtcattgccatctctgatcaggggaaggatcccttacta
tatattccacctgttcttacacttctgcagttgaaaagtgactaccaagccttgccaaac
aggagtggaccacaagcactgattttatgtcctggatggaagaaggcacaacttgttttt
gacatgctgaaaacgtacaggaaaggctgcagacaccttcatctgatgctgataatcctt
gggcagaacaaggaagcagccagccaagtggaaatccgaggctgtgaattagtagtgaca
acaccatacaacctcctgagactgctggaatataacactgggttattgtgcaaactttgc
catcttgttcttgatgagatcgaggtgctgctctctgacactgctgagcaggtgtttgct
atactggattgttacaagaaagccactgctcaggcacaggggaatctaccacatcagatc
gttgctgtgggaactcagtggaataaacacatcacgcccttgataacggagttcatgaac
gatcctcacattgtgataacagctgttgaagaagctgccatctttggaaatgtgcaacag
gtggtgcagccctgcatgaacatcaacagaactgctgagttactcaaaattctggatttt
acccagaggaatcttcaaaaggtgttggtattcactgactcagttactgatgtagagatg
attgataaggcactgaagagcaactcagtagtttccttgaaaaagcataaggagagcaag
tgtaatgctcagtgtgtcttggagaggtggagaaaaatgcacagttctggcacccctgct
gtgttagttttgacagatgattgcctgcagtccttgggaatcacagatgccacttgtgtg
atccatttcagtttcccatctccaggagtctttgggcagcgcctgcaaagcctgagtgac
aactttggcactgggataaaggattctgctggagatcaggaacatgtgaaggccaagtca
gtcattctgttgacagagagcagttcctgtcatgtagctgggattctcccctatttaaag
catgcagaagctgaaattccagaagaactctatgatttgactcccagggtgctggaatat
gaggaagataagttttcaaggcccctctgtgcttctcttaagacatttgggatttgcagg
aacagaacagagtgtccagatcgtcatcaaattaattcagcagtagacatggcccagagt
attgcagatgaaatgatagacacacctgaacgtgtcacaatcctgcctctctacattgta
catgcaacaaactactttggtcgaatagtcaagaaacaaaaggaccaatatacagttctt
gctaaagaaatgaatgattatttcaaggtaccaggacataggatttctgttaacaacgtg
gagaaatcagtgttttatgggttatgtgagggagccgtttgccacagggttcaggtggtt
gagactccagcaaaagatgaagaaaatgtctgtaagatcacaattaaatatatagatgaa
ggcaggacaagtcaagtgaatagtgatcagctgcttcacttacctgcaaagtttcagaat
ctcccacctcaggctgtggaaattgtagtttgtagagtaaaacccatagataatgaagtt
gaatggaatccaaaggtgactgatcacattaatcacaaaattaaaggaaaacttcatcat
gcaaaagtggtgcataccttgggaaagacagtttgggtagacccaatggttggggttacc
aatcttgccgtgatgaagatgtggatcaatgagtacaacattcgatctgagattttgtca
acgggtttgggaactgacaatcctcaacacgtagaagaaattcagaagctgtgcagacag
attccagttttggatcatgcagagaggttggagcatttacctgctaagcctgagactact
gttgaaaaattcagaacttcagtacaggatttgttagtaagaagcacaaaagagggcaca
gctggtctagaggaggtgccaagtccacaggatacatcgatacaggcagattctgctgaa
agctgtaacagttctgtgacttctccaagcaatgatgcagttcaaacaagggaagcagaa
gactctactgtacatcaacagaaaggctgtcatccacaaatcaagtggtttcaggataat
gtgactgtgacactgaaggtacaaatactgagggcagctgatagtaaatgcgagttctct
agagagaaggtggttttcagtgcttattcagagggcaaattttatgtggctgacctggag
ctgtatcagtcaataattgcagagaagtctacatgtgtgattaaggatgcagaagctgtg
atattactggtaaaagagaaaaaaggagcctggtgcaaattactgaagaacaagaacatt
cacgtgtccttagattttgaacactgggaagagtctgaagatgaaaggccttttacagtt
ggttctggaaaactgagctaccctcctgcaggatctgaggactggtttgagtcctcagaa
gacagtgatacagaaagtgatgaataa
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