Sylvia atricapilla (blackcap): 136366880 Help Entry 136366880         CDS       T10263                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism sati  Sylvia atricapilla (blackcap) Brite DNA repair and recombination proteins [BR:sati03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      136366880 (SPG11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  136366880 NCBI-ProteinID:  XP_066184251 LinkDB All DBs Position 13:complement(695886..730315) Genome browser AA seq 2370 aa AA seqDB search MAAGPRAELRVLLVPRSGPPRGWARARLSRARDALGALLLPAGICLQALGPGRAGRARDS VLPGAWADFMWDGAEDDGLQSNKTKLLALGQSRDLSVYEFSGEDGKHNPNSLHSCKEETL KKLLEAKNISLPSISSVKILSFANNKCKLLLNRFLLVHLTFPGEDSPSETCDCFPLALPP EAVGRITDSQFCRGILFLLDSAGWIYIFDCCDGASLGKVRVGAGPAPVSPLAALAVSPDL STAVVTNSCHWALAVQLNTYFRQFPEHLLCKRDPENVPVKPPEGLDEDDLASSEHSMELL SSPFRTDRSWKAHLSSLWDRVRRRKAPASPDLVDNSNLPWYQFFTHLEDHDPELCEDPER MVAFVPRAVTWVASQALRGQGAARGGAGQQWAQIPVGAAQGMVQLECKLVTGAQAVFVVL AQDTGLSLVLWDFESQEVTCSHFGRDSVFVECSAEVPLCLLLTERGLCLVLFGLSQEEFL TRLMMFGSAGVVDSVCRLNGWERCSIPIHALQAGLENRQLDTVDLFLKSKESVFSLSAPC PGHPGDGASQSYLRNLEELRPALNLLCSAIQDNDMEPHSKPFSEQLLSLTLTFLTKQLEE IFVHTEEPDEFLQKAADILTDYIIKLRRFLRKYPRPPVAPEHTGADLDEDLPEIEESQKW EKLTPEEVIAEAILSNKIPEAQIFFRRQQHPAESLQEFMQTGLSLVHACLLKGNTREASE LLRNMGFDVKQELHKICFHTEDRHVRELLVKVLQEENYFSEKEKKIIDFVHQVENFYSES FQGNEEPQSLSSYSSWRRQQELCRQQELLGWGSPGSCRLRVMFNWALWWDELLQEMILLP RKPPQELRSCSAEVLWMHLTAQHDWPRLCSWIEESEPSQAPCGQAWPPLSPDIVDRSTLC SSYMRQDILNKLARKGIFVPSELEDFELLLQRLSCLGGVLQNPHPVPKYSSASGLDFHAQ FVLYCLEHSLQYLLYTYLDYYSLTPSNCPILGKKELHEAHPWFEFLVQCRGVASNPRDPK MIFQASLANAQMLIPSSQGGVSSILLEGRTLLALATTVYGPGGIDQVLQNEDTEKPLRKV DPQLLKMALTPYPKLKAALFPPCTAHGLLPPDISLYHLLQSLMPFDPRKLFGWQSANTLA VSDAWSELPHFCSPGLVSRHAVLERLDFPFYLLHGRPAFAFGTFLGQQLARSKTPRQLVQ QAAREAQVLALSSLSVPSVAAACVCFLELLGQDSLRLRVQLRAAKVILSHSTGPGAPPHP HSHARDTLVEKLIKLADGEKAAAAAVLTLLEEAFWASIEHQGIKRTSSDSRRQWSLVMQF CKLHNLELSTSFLRECAKSNEWLQFLLQSQLCGHQPAQVIPLLQDFPPVLRDHLLLALGK LQGAEAAGREPAGSLFQVLLQCQGQPSPSCYLLAEGLRAQAPILSVLAACCPDANLVSCL CVWIITSVDDATRAEATAHTQGGSPQWDLQDLAVIWKVFLRKQKSKTLLNGFQLFLKDSP LLHMLEMYELCMNCKKYNEAKTKLDQFQESLTKLAAGAEVPVPWLEAQALFLLELMLQQC HTQYELGKLLQLLAAAQSPLLDGPHVKRLCALSEALRDSCISISSSILAPCSLETFQREC SSILEQLQEEGMFSLAREVAALAELPVDGIVTHEVLRDLNHLRDTGQWHQTQTRAEFWKK CTETFAKHSMCSRAAAEFFLQQANDVWEPSGQERTTSLMERQLLLTLAGHWLAKEAEVAV QELREVEKQIWQCRVARRALGAGGSGQCPCPSALSLGSLAQQFSFGGLLALDTGRQGRPG APGAGQPQLGPEERAALAELLGALLDQGGVLEATRVCHYFQLWPRDVSLVLQCRALASGE VGLEQLQPEVRALLAARAGTASASSLEDWSPLGAPSGDDAVVAALKALAEECVHGRGYCR QVLCLYELSQELSCPFGELWAREPREVLGAILARPGPERGRRAQAFISCQGLAPATVATL LAQQITHELLASAQGKGQKQWNPAVESQALLQLAKLCQDHTLVGMKLLDKISSVPCGELS CITELLILAHSCFSLTCHMEGITRVLQAARLLTEEHLAPKEEYGLLVRLLTGIGRYNDMT YIFELLHQKHYFEVLMRKNLDPSGTLKAALLDYTKRCRPGDSEKHNMIALCFSMCREIGQ NHEAAACTQLKLIESRPWEESLQDVANLKKLLLKAVTLFIDAAESYSKDSCVRQALRCRR QTRLITLQLHFLGSGLSTRIINLGRQELPGAILALPRFYQAAIVAEAYEFLPDWAEVLFQ QVITRGDFVYLDEFKQQRLLRPGLFEEVAKRVKQQPPAEAALRNLKRFLSHCEDIYTYYR LAYDHKFYDVVNSLLKDPQTGCCLNDLLSS NT seq 7113 nt NT seq  +upstreamnt  +downstreamnt atggcggcggggccccgggccgagctgcgagtgctcctggtgccccgctcggggccgccg cggggatgggcgcgggcgcggctgagcagagccagggacgctctgggcgccctcctgctc cccgccgggatctgcctgcaggcgctggggccgggccgggccgggcgggcccgggacagc gtcctgcccggagcctgggctgacttcatgtgggacggtgcagaagatgatggtttgcaa tccaacaagaccaaactcctggctcttggccaaagccgtgacctgtctgtgtatgaattc agtggagaagatggaaaacacaacccgaattccctgcacagttgtaaggaagagacactt aaaaagctcctcgaggctaaaaacatcagtctgccttcaatttcctctgtgaagattctg tcttttgcaaacaacaagtgcaaacttctgctcaaccggtttctccttgtgcacctgacc ttccctggggaggattctccctcagagacctgtgactgcttccccctggctctgccccca gaagctgtggggagaattactgactcccagttctgcagggggatcctgttcctgctggac agtgctggctggatttacatatttgattgctgtgatggggccagcctggggaaggtcagg gtgggagctggcccagccccagtgtcccccctggctgccctggcagtgtcccctgacctc agcacggccgtggtgaccaacagctgccactgggccctggctgtgcagctcaacacctac ttcagacagttccctgaacatttgctctgtaagagagatcctgaaaacgtcccagtgaag cctccagaggggctggatgaggatgacctggccagttctgagcacagcatggagctgctg tcgtcacctttccgcacagacaggtcctggaaggcacacttgtcctcactgtgggacaga gtaaggagaagaaaagcaccagcttctccagatttggtggacaactccaatttgccttgg tatcagttttttactcatcttgaagaccatgatcctgagctctgtgaggatccagagagg atggtggcctttgttccccgggctgtcacatgggtggcttcccaagcgctccgaggccag ggtgcagcccgtgggggtgcaggacagcagtgggcacaaatccccgtgggagcagcccag ggaatggtgcagctggagtgtaaactggtgactggagctcaagctgtgttcgtggtgctg gcacaggacacggggctgtctctggtgctctgggattttgagtcccaggaggtgacgtgt tcccacttcggcagagacagtgtcttcgtggagtgcagtgcagaggtgccactgtgtctg ctgctgacagagcgtggcctgtgcctggtgctgtttggattaagccaggaggagtttctg accaggctgatgatgttcggcagcgccggcgtcgtggattccgtgtgtcgcctcaatggg tgggagaggtgctccatccccatccatgccctccaggcaggtttggagaatcgccagctg gacacagtggacttgtttttgaaaagcaaagaaagtgttttcagtctgtctgcaccctgc cctgggcaccctggggatggggcctcccagtcctacctgagaaatctggaggagctcagg ccagctctaaacttgctctgctcagcaatccaggacaatgacatggagcctcacagcaaa cccttctctgagcagctcctgagcctcaccctgactttcctgaccaagcagctggaggaa atctttgtgcacacagaggaacctgatgaattcctgcagaaggctgcagatattttaact gattacatcatcaaactgagaagattcctgaggaaataccctcgaccaccagtggctcca gagcacacaggagctgacctggatgaagacctgcctgagatagaagagagccaaaagtgg gaaaaactgactccagaggaggtcattgctgaggccatcctgagcaacaaaatcccagag gcccagatcttcttccgaaggcagcagcatcctgctgagagcctgcaggagttcatgcag acaggtctgagcctggtgcacgcctgtctgctcaagggcaacaccagggaggcctcagag ctgctgaggaacatgggctttgacgtgaagcaggagcttcacaagatctgctttcacacc gaggacagacacgtcagggagctgctggtgaaagtcttacaagaagaaaattatttttct gagaaagagaagaaaattatagactttgtgcatcaggttgaaaacttctactcagaatcc ttccagggaaatgaagagccccagtctctttccagttacagcagctggaggaggcagcag gagctgtgcaggcagcaggagctgctgggctggggcagccccgggagctgcaggctcaga gtgatgtttaactgggctctctggtgggatgagctgctgcaggagatgattctgctcccc aggaaaccaccccaagagctcaggagctgcagtgctgaggtgctgtggatgcacctgaca gcccagcacgactggcccaggctctgctcctggattgaggagtcagagcccagccaggct ccctgtggccaggcctggccccccctgagccctgacatcgtggacaggagcactctgtgc agctcctacatgaggcaggacatcctgaacaagctggccagaaaaggaatctttgtccct tctgagctggaagattttgagctcctgctccagaggttgtcgtgcctcgggggagtcctg cagaatcctcaccctgtcccaaaatacagcagtgccagtggcctggatttccatgctcag tttgtcctctactgcctggagcacagcctgcagtacctgctctacacttacctggactat tacagtttaaccccctcaaactgccctatcctggggaagaaggagctgcatgaggcacat ccctggtttgagttcctggtgcagtgccgaggggttgccagcaatccccgagatcccaag atgattttccaggcgagtctggccaacgctcagatgctgatccccagcagccaggggggt gtgagcagcatcctgctggagggcaggaccctgctggccctggccaccacggtgtatggc cctgggggcattgaccaggtccttcagaacgaggacacagaaaaacctctgaggaaagtt gatccacagctcttgaagatggccttgaccccttaccccaagctcaaggctgctctcttt cccccctgcactgcccatgggcttttgcctcctgacatctcactctaccaccttctgcag tccttaatgccctttgaccccaggaaattatttggctggcagtcagcaaacactcttgct gtgtcagatgcctggagtgagctgccccacttctgcagcccggggctggtgagcaggcac gccgtgctggagaggctggatttccccttctacctgctccacgggcgccccgccttcgcc ttcggcaccttcctggggcagcagctggccaggagcaaaaccccccggcagctggtgcag caggcagcacgggaggcccaggtgctggccctgtcctcgctcagtgtcccctcggtggct gcagcctgtgtgtgcttcctggagctgctggggcaggacagcctccgcctgcgagtgcag ctcagagctgccaaggtcatcctgagccacagcaccggccctggggcccctcctcatcct cacagccacgccagggacaccttggttgagaagttaataaagctggctgatggtgaaaaa gcagcagcagcagcagttctgaccttgttggaagaggccttctgggcttccatcgagcac cagggaataaagaggacatccagtgactccaggaggcagtggtccttggtcatgcagttc tgcaaactgcacaacctggagctgagcacgtccttcctgagggaatgtgccaaatccaac gagtggctgcagttcctcctccagagccagctctgtggccaccagccagcccaggtcatt cccctgctgcaggatttccctcccgtgctccgggatcacctgctgctggccctggggaag ctgcagggtgctgaggctgctggcagggagcctgcagggagcctgttccaggtgctgctg cagtgccagggccagcccagcccctcctgctacctgctggccgaggggctccgggcacag gcccccatcctcagtgtgctggcagcctgctgccccgatgcaaacctcgtctcctgcctg tgtgtgtggatcatcacttctgtggatgatgccaccagggcagaggcaacagcccacacc cagggagggagtccccagtgggacctgcaggaccttgctgtcatctggaaagtcttcctg aggaagcagaagagtaaaacacttctgaatggcttccagctgtttttaaaggattcccct ttgctgcacatgctggagatgtatgaactgtgcatgaactgtaaaaagtacaacgaggct aaaaccaaactggaccagtttcaggaaagcctcacaaaactggcagcaggagccgaggtg ccggtgccgtggctggaggcgcaggcgttgttcctgctggagctgatgctgcagcagtgc cacactcagtacgagctgggaaagctgctgcagctcctggctgctgcccagagcccgctg ctggacggcccccacgtgaagaggctgtgtgccctcagtgaggccctgagggactcctgc atctccatcagcagctccatcctggccccctgcagcctggagaccttccagagggagtgc agctccatcctggagcagctgcaggaggaggggatgttcagcctggctcgggaggtggca gccctggctgagctgcccgtggatggcattgtcacacatgaggttctgagagatctaaat catttaagagacactggacagtggcatcaaacccagacaagagccgaattctggaaaaaa tgcaccgagaccttcgccaaacattccatgtgcagccgggccgcagcggagttcttcctg cagcaggccaacgacgtgtgggagccctcggggcaggagaggacaaccagcctcatggag agacagctgctgctcaccctggctgggcactggctggccaaggaggccgaggtggccgtg caggagctgcgggaggtggagaagcagatctggcagtgccgggtggcccggcgagcgctg ggggccggcggctcggggcagtgcccatgtcccagcgccctgtccttgggcagcctggcg cagcagttctcctttggcgggctgctggccctggacacgggcaggcagggccggccgggg gcgccgggggccgggcagccccagctggggccggaggagcgggcggcgctggccgagctg ctgggcgccctgctggaccagggcggcgtgctggaggccacccgggtgtgccactacttc cagctgtggcccagggacgtgtccctggtgctgcagtgcagagccctggcctcgggggag gtcgggctggagcagctgcagcccgaggtgcgggcgctgctggcggccagagcgggcacg gcgagcgcatccagcctggaggactggagccctctgggggccccgagtggggacgacgcc gtggtggcagcactgaaggctctggcagaggagtgtgtccatggcaggggctactgcagg caggtgctgtgcctctacgagctctcccaggagctgagctgcccctttggggagctgtgg gcccgggagccccgggaggtgctgggggccatcctggcgcggccggggccggagcgcggc cgcagggcccaggccttcatctcctgccaggggctggcccctgccaccgtggccacgctg ctggcacagcagatcacccacgagctgctggcctcggcacagggaaaagggcagaagcag tggaaccctgcagtggagagccaggccctgctgcagcttgccaagctgtgccaggatcac accttggttgggatgaagttactggataaaatctcctctgtcccctgtggggagctgtcg tgcattacagagctgctgatcctggcccacagctgcttcagcctgacgtgtcacatggag ggcatcacacgggtgctgcaggcagctcggctgctcaccgaggagcacctggcccccaag gaggagtatgggctgctggtgcgcctgctgacgggcattggcaggtacaatgacatgacc tacatcttcgagctgctgcaccagaagcattacttcgaggtgctcatgaggaagaatctg gacccgagcgggacgctgaaggcggcgctgctggactacaccaagcgctgccggcccggc gacagcgagaagcacaacatgatcgcgctgtgcttcagcatgtgcagggagatcggacag aaccacgaggcggccgcctgcactcagctcaaactcatcgagagccggccctgggaggag tctcttcaggatgtggcaaatttaaagaagctgctgctgaaagctgtgactctcttcatt gatgcagcagaaagttactccaaggactcgtgtgtgcggcaggcgctgcgctgccgccgc cagacgcgcctcatcacgctgcagctgcacttcctgggctcggggctgagcaccaggatc atcaacctgggcaggcaggagctgccaggggccatcctggccttgcccaggttctaccag gcagccatcgtggccgaggcctacgagttcctgcccgactgggccgaggttctgttccag caggtgatcaccaggggggactttgtgtacctggacgagttcaagcagcagcggctgctg cggcccggcctcttcgaggaggtggccaagagggtgaaacagcagccccctgctgaggct gccctgaggaacctgaagcggttcctgagccactgtgaggacatctacacctactacagg ctggcctacgaccacaagttctatgacgtggtgaactccctgctgaaggaccctcagact ggctgctgcctcaacgacctcttatccagctga

DBGET integrated database retrieval system