Sylvia atricapilla (blackcap): 136367340
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Entry
136367340 CDS
T10263
Symbol
PCDH12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sati04515
]
136367340 (PCDH12)
Cell adhesion molecules [BR:
sati04515
]
Cadherins
Protocadherins
136367340 (PCDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
136367340
NCBI-ProteinID:
XP_066184955
LinkDB
All DBs
Position
14:1473455..1484718
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AA seq
1177 aa
AA seq
DB search
MARCCGGPEDSAGMRWPAGQPMAARRGRGGSASGVLGLSRSALQLPALWWWYLFLSADAQ
EVATFTVQYRVLEEVPPGTVIGSLAEHFEGGESGDAAETFQLMETPGRFPLHVGSGDGVL
STAGRVDREQLCRHSDPCWVSFDVLAAQSPALIHVEVQVMDVNDNVPRFPTPELELEISE
SASLRTRIPLDRALDADAGPNARCSYALSPSEHFALEVVSGSDGTRHAELIVVKEVDREL
HSSFDLVLTATDHGEPPKSGTALIKVIVLDSNDNSPMFAESSLTVEVQEDTQPGTLLVTV
TATDPDQGPNGEIEYSLSRHAPPEVLSTFSIDARTGSILLRLPLDYEETHAYELDVQARD
LGANPIPAHCKVLVKVLDVNDNAPDVHVTWAARVPVLSEALPKDSFVALVTASDPDSGSN
GQVLCSLSQGSEHFRLKRTNSHSFALLTNASLDRERRAEYNLTLVVRDMGHLSLAVLKHL
TICISDVNDNAPAFEKAAYEAAVAENSEAPAFLLTVCATDPDLDFNGKVTYRILDPSALG
LVSVDPITGDVFALQAFDYEQVKSLEFLVTAEDGGHPKLASNISIRLAVLDRNDNAPIIT
TPALVGGVATLSVLVNVDTGCCWVVPGNGSTQGAAAVANSTLTSCPGSPFLFTIVARDVD
SGINGALRYDLVGGDDARLFILDPLLGQVSLNASNASSLAGSQRELLVRVSDQGDTPLHT
LARLRLLFRRHGAFSKMSAQEPGWPSLPVLLVICLAALLGGCLLLLALTLSLRKKDKKDG
TAYNCREAEDARRQQQLKKPHRQIQKADIHLVPLLRGRPREPQAPRPGQDEPPAAAAPQA
PLHLTPTLYRTLRNQRTPKDSEEQQGAFELPVLQRRPCQPHRPKHPGKEAPSPPEAPVHG
KSLVKPPAGEPQVPPERPVGAGGPGQPQPHQQILRSLVRLSLVALAEQSPTGEFAMESPP
VQQISQLLSLLHQGQFQPKTNYRGNKYTSKNGSRAAGLDTGLDTGLDTGLDTDCLSTKDS
GHGESEAGDRDSDSAFELSVQQLVGEELETLLEPQAELALKRLTAADPAWVARLSLPLTG
NYKDNVFSPASPCSPEDEEAARQEKPRTFETFGKGAGADPDGTGTRLASTFLSEMSSLFE
MILSQKVQVHSEAGAGLLRQLSARGHGLGLGDAAPGP
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggtgctgcggtggccctgaggactctgcggggatgcggtggccggcgggacag
cccatggcagcgcggcggggccgcgggggctcagccagcggcgtgctggggctgagccgc
tcggcgctgcagctgccggcgctgtggtggtggtacctgttcctgagcgccgatgcccag
gaggtggccacgttcacggtgcagtaccgggtgctggaggaggtgcccccgggaactgtc
atcgggagcctggccgagcacttcgagggtggcgagagcggcgacgcggccgagaccttc
cagctgatggagacccccgggaggttcccgctgcatgtgggcagcggggatggggtgctc
agcacggccgggcgcgtggacagggagcagctgtgccgccacagtgatccctgctgggtg
tccttcgacgtgctggccgcccagagcccggccctgatccacgtggaggttcaggtgatg
gatgtcaacgacaacgtgccgcggttccccacgcccgagctggagctggagatctcagag
agcgcatccctgcggacgcggatcccgctggatcgagccctggatgcggatgctggcccc
aacgcccgctgctcctatgctctctcccccagcgagcactttgctctggaggtcgtctct
ggctccgacgggacgaggcacgcggagctcattgtggttaaggaggtggaccgggagctg
cactcctcctttgacctcgtgctgacagccactgaccacggggagccgccaaaatcaggt
actgctctgattaaagtcattgtcctcgactccaatgacaacagccccatgtttgcagag
agctccctgacggtggaggttcaggaagacacccagcctgggaccctcctcgtgacagtc
acggccaccgaccccgaccagggtcccaatggggagatcgagtacagcctgagcaggcac
gcgccccccgaagtgctgagcaccttcagcatcgatgcccgcacgggcagcatcctcctg
aggctccctctggactacgaggagacccacgcctatgagctggacgtgcaggcgcgggac
ctgggcgccaaccccatcccggcgcactgcaaggtcctggtcaaggtcctggatgtcaat
gacaatgctcccgatgtccacgtcacctgggccgcgcgggtgcccgtgctgtccgaggcc
ctccccaaggacagctttgtggccctggtgacagccagtgaccccgactcgggaagcaac
gggcaagtgctctgctccctcagccagggctctgagcacttcaggctgaagaggaccaac
agccacagcttcgcactgctgaccaacgcctcgctggaccgcgagcggcgcgccgagtac
aacctgacgctggtggtgcgggacatggggcacctgtccctggccgtgctgaaacacctc
accatctgcatcagtgacgtcaatgacaatgccccagccttcgagaaggctgcctacgag
gctgctgttgctgagaacagtgaagcacctgccttcctgctcaccgtctgtgccaccgac
cctgacctggacttcaacgggaaagtcacctacaggatcctggacccctctgctttgggg
ttggtctcggtcgaccccatcactggggacgtttttgccctccaagcttttgattacgag
caggtgaagagcctggagttcctggtgacggcagaggatggagggcatcccaagctggca
tccaacatctccatcaggctggctgtgcttgaccggaatgacaacgcacccatcatcacc
acaccagcgctggtgggaggggtggccacgctctctgtcctggtcaatgtggacactggg
tgctgctgggtggtccctgggaatggcagcactcagggggctgcggcagtggccaattcc
acactcacgtcatgccctggcagtcccttccttttcaccatcgtggccagggatgtggac
tccggcatcaacggggctctccggtatgatctggtgggtggggatgatgccaggctcttc
atcctggaccccctcctggggcaggtgtccctcaatgccagcaatgccagcagcctggct
ggcagccagcgggagctgctggtgcgggtgagcgaccagggggacacccccctgcacacc
ctggcccggctccgcttgcttttccggcgccacggggccttctccaagatgtcagcgcag
gagccgggctggcccagcctccccgtgctgctggtcatctgcctggccgctctcctgggc
gggtgcctgctgctgctggcgctgaccctgtccctgcgcaagaaggacaagaaggacggc
acggcctacaactgccgggaggccgaggacgcccgcaggcagcagcagctcaagaagccg
cacaggcagatccagaaggccgacatccacctggtgccgctgctccggggccggccccgg
gagccccaggccccccggcccggccaggacgagcctcctgccgcggccgccccacaggcg
cccctccacctcacccccactctctacaggaccctgagaaatcagaggacaccaaaagac
tccgaggagcagcagggcgccttcgagctgcccgtgctgcagcgccggccctgccagccc
cacagacccaagcacccggggaaggaggccccgagcccccccgaggcgccagtgcacggc
aagagcttggtgaagccgcccgcgggagagccccaagtgccacccgagcggcccgtgggc
gcagggggccccgggcagccccagccccaccagcagatcctcaggagcctggtccggctg
tcgctggtggccctggcagagcagagcccaaccggggagttcgccatggagtcgccccca
gtgcagcaaatctcccagctgctctccctgctgcaccagggccagttccagcccaaaaca
aactacaggggaaacaagtacacgtccaagaacggcagcagggctgcagggctggacacg
gggctggacacggggctggacacggggctggacacggactgcctgagcaccaaggacagc
gggcacggcgagagcgaggccggggaccgcgactccgacagcgccttcgagctctccgtg
cagcagcttgtgggagaggagctggagaccctcctggagccacaggcagagctggccctc
aagaggctgacagctgcagacccagcgtgggtggcccggctgtccctgccactcactggc
aactacaaggacaacgtcttctcccccgcctcgccgtgctcccccgaggacgaggaagct
gcaaggcaggagaaaccaaggacctttgagacctttggcaaaggcgccggggctgacccc
gatggcactgggacgaggctggccagcaccttcctgtcggagatgagcagcctgtttgag
atgatcctgtcgcagaaggtgcaggtgcacagcgaggctggcgcggggctgctgcggcag
ctgtcggcccgcgggcacggcctcggcctgggggacgctgctccggggccctaa
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