Sylvia atricapilla (blackcap): 136367351
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Entry
136367351 CDS
T10263
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
136367351 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sati01009
]
136367351 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sati04515
]
136367351 (PCDH1)
Protein phosphatases and associated proteins [BR:
sati01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
136367351 (PCDH1)
Cell adhesion molecules [BR:
sati04515
]
Cadherins
Protocadherins
136367351 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
136367351
NCBI-ProteinID:
XP_066184977
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All DBs
Position
14:complement(1799772..1852401)
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AA seq
1225 aa
AA seq
DB search
METARDQRAGARHGAQRRHHPTPLQHRMNPLASCLGLWLLCQLPALASGTRVVYKVQEEQ
PPNSLIGSLAADYGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRENLRECQHLLP
GEPCFLEFEVSITNLNANSSPRLLEGKIEVLDINDNTPNFASPVLTLSIPENTNIGTLFP
IPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENS
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTD
PSSKGAFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKS
KSKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSAQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggagacggcgcgggaccagcgcgcaggggctcggcacggagcgcagcgccggcaccat
ccaactcccctgcagcacaggatgaacccactggcatcctgcctgggcctgtggctcctc
tgccagctccctgccctggcctcggggacacgtgtggtctacaaagtgcaggaggagcaa
ccccccaacagcctcatagggagcctggccgctgactacggcttaccagacatggggcac
ctctacaagctggaggtgggggccccgtacctccgtgtggatggcaagactggggacatc
tacaccacagagacctccatcgaccgggagaacctgcgggagtgccagcacctgctgccc
ggagagccctgcttcctggagttcgaggtgtccatcacgaacctgaacgccaacagcagc
ccgcgcctgctcgaggggaagatcgaggtgctcgatatcaatgacaacactcccaacttt
gcctcgcccgtcctcaccctctccatccccgagaacaccaacatcgggacgctcttcccc
atccccctggccatggatcgggactcgggccccaacggcgttgcctcctacgagctgatg
gctggtccggaggcgcaggagctctttgggctgcaggtggccgaggaccaggacgagaag
cagcctcagctgatcgtcatggggaacctggaccgggagcagtgggactcctacgacctg
accatcaaagtgcaggatggagggaaccccccgcgggccagcagcgccctgctccgcatc
accatcctggacatgaacgacaacgcgcccaagttcgagaaggccctgtacgaggcagag
ctctctgaaaacagccctgtggggcactctgtcctccaggtgaaagccaacgattcagat
cagggtgccaacgccgagatcgactactccttccaccaggcctcggatatggtgcggcgg
ctgctgcgcctggaccgtgccacggggctcatcaccgtgcagggccccatcgaccgcgag
gacatcggcaccctcaagttctccgtcatggccaaggacaagggcgccaaccccaagagc
gcccgcacacaggtggtggtcaccatcaaggacatgaacgacaacgcgccctccatagag
atccgaggcatagggttggtcacccaccaggatggcatggccaacatctcggaggacgtg
ccagtagagacagcagtggctctggtgcaggtgtctgaccgagatgagggtgaaaactct
gtggtgacctgcgtggtggccggtgacgtcccattccagctgcgccaggccagtgagaca
gggagtgacagcaagaagaaatacttcctgcagaccaccacgccgctggactatgagtcg
gtgaaggagtacacaattgagattgtggccgtggactcggggaacccgcccctctccagc
accaactccttgaaggtgcaggtgatggacgtcaatgacaatgcccctgtcttcagccag
agcttcactgaggtggccttccctgagaacaacgagcccgatgagctggtcatggaggtg
agtgccactgatgctgacagcgggtccaacgccaagctggtttattccctggtgacagac
ccctcctcgaagggtgccttcaccattgaccctgactcaggggagatccgggtgaaggca
gtgctggaccgagagcagcgggaacgctatgagttcttggtggtggcagaagataaaggc
agccccagcaagcagggcacagcatctgtggccatcaacgtcatggacaggaatgacaac
gaccccaagttcatgctgagtggctacaacttctcagtgatggagaacatgccacccctc
agccccgtgggcatggtgacggtcatcgatgctgacaaaggagaaaacgcccggatccag
ctgtcggtggagcaagacaacggggattttgtcatccaaaatggcactggcaccatcctc
tccagcatctcttttgaccgggagcagcagagcacctacaccttccgactcaaggcggtg
gacggtggggatcctcccaggtctgcctacgtgggggtgaccatcaacgtcttggatgag
aatgacaacgcccccttcatcacttccccctccaacgccacctacaagcacatcctgccc
cacaccagccccggccagcaggtgagcaaggtcaaggcagaggacatcgactctggcatc
aacgccgagctgatctacagcatcacaggaggaaaccccttcgagctcttccagatctcc
ccgcaaagcggagacatcaccctggagaaggagatcctgcgcaagcaccacggcctgcac
cgcctggtcgtgcgcgtcaacgacaagggcaagccctcacggcacggcacggccctggtg
cacttctacgtcaacgagacgctggccaaccgcacgctgctggacacgctggtggggcac
agcctggacaccccgctggacatcgacatcgctggcgaccctgagtacgagcgcagcaag
cagcggagcaacatcctcttcggggtcatcgctggcatcgtggccgtcaccctggtcatc
gtgctggtggtcctggtgcgctactgccggcagcgcgaggccaagagcggctaccaggcg
ggcaagaaggagaccaaggacctgtacgcacccaagcaggccagcaagagcgggaagagc
aagagcaaggtgaagaagagcaagtctcccaagccacccaaacccacggaggatgaggag
gagacagggctacagaaatcgctcaagttcaacctcatgaacgactccgtcagcgacagc
ccccggatccacctgcccctgaactaccctccgggcagcccggacctgggccgccactac
cgctccaactcgccgctgccctccatccagctgcagcctcagtcaccctctgcctccaag
aagcaccaagtggtgcaggacctgccggccaccaacacatttgttggcaccggggacaac
aactcgacgggctccgagcagtactcggactacagctaccgcaccaacccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggac
ctgcaggacccctcccagcacagctactacgacagtgggctggaggaatccgagaccccc
agcagcaaatcttcatcagggccccgcatcgggcccctggccctgcccgaggaccactat
gagcgcaccacgcccgatggcagcatcggggagatggagcaccctgagaacgatctccgg
cctctgcccgatgtagccatgactgggacctgcacccgggagtgcacagagttcggccac
tccgacacctgctggatgcctgggcagtcctcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagaccgagggagccaagagcaagtcgggaacggc
agccccagactgtctgaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagccctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccagccggccaccaccccctcggcccagaccaccaag
agggagatctacctgtga
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