Sylvia atricapilla (blackcap): 136367859
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Entry
136367859 CDS
T10263
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03430
Mismatch repair
sati03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136367859 (PMS2)
03460 Fanconi anemia pathway
136367859 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sati03400
]
136367859 (PMS2)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
136367859 (PMS2)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
DUF5741
Motif
Other DBs
NCBI-GeneID:
136367859
NCBI-ProteinID:
XP_066185772
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Position
15:1201617..1213390
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AA seq
871 aa
AA seq
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MEAAAPCPQPAAAIRPIDRASVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDH
GAELIEVSDNGGGVEEENFEGLTLKHHTSKIQDFSDLIHVETFGFRGEALSSLCALSDVT
IFTCHKSAKVGTRLVFDHNGKITQKTPLPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEY
AKMVQLLQAYCIVCKGVRINCTNQVGQGKKSCVISTAGSPSLKENIGAVFGQKQLQSLIP
FVQLPPSEAVCEEYGLNPANMPQNLYSITGFISRCDHGVGRSTTDRQFFFINQRPCDPAK
IVKIVNEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILLQEEKFLLAILKTSLLE
MFGSDVNKLNVNQKLLDIAGNLKKTLPEETEKPQAEMPSDSETENLSGEGKRTMALARLR
ESFSLHQATESNFQRSKKVKQQHSSPRQRLLDTTGSTVKIQKAVLSKEAESSPKLDSKVS
IPRRHLRKLEDAADSGFCSISESDAGCSTPEAGSYINSESAINSEEEYWSTEEQMQKECL
KTAGCSKKSLDCDVQVLDTEPKLDQVNDWTDQNKFSQKVKSCSPRVKHFKSRNFKSEADD
SKAGKYPEVKNTSVDVLVEVKKKIVPLEFSMKVLAEKVKKLIQQQQKNTETENYRRFKAK
ISPGDNKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEM
LQQHTVLQGQKLIVPQNLNLTAVNETVLIENMEIFRKNGFDFVINENAPVTQRVKLVSLP
TSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMRKLI
THMGEIEHPWNCPHGRPTMRHIVSLDLISPE
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggccgcgccctgcccgcagcccgccgcggccatccggcccatcgaccgcgcc
tctgtccatcgcatctgctcgggccaggttgtgctgaacctcggcactgccgtcaaagag
ctggtggaaaacagcctggatgccggagctaccaacatcgatataaaacttaaagatcat
ggggcagaactgatagaagtttcagataatggaggtggagtggaagaggaaaactttgaa
ggcttgactctgaagcatcacacatcaaagatacaagatttctctgatctaatacatgtt
gaaacatttgggtttcgaggtgaagctttgagttcactgtgtgcattaagtgatgtcacc
attttcacctgtcacaagtcagcaaaggttgggactcgtttggtgtttgaccacaatggc
aaaattactcagaagactcctttgccacgacagcaaggaacaactgtcagcatccagcag
ttgttttataccttaccagtgaggcataaagagttccaaagaaacatcaaaaaggagtat
gccaaaatggtccagctgttacaggcctactgtattgtttgcaaaggagtgcggattaac
tgcactaatcaagttggccaaggaaagaaaagctgtgtgatatccactgctggaagtccc
agcttaaaggagaacattggagcagtatttgggcaaaagcagttgcagagccttattcct
tttgttcagcttcctcctagtgaagctgtttgtgaagaatatggactcaaccctgctaat
atgccacaaaatctttatagcattactggcttcatttctcgctgtgatcacggcgttgga
aggagcacaacagacaggcagttcttcttcatcaaccaacgtccctgtgatccagcaaag
attgtcaagattgtgaatgaagtttatcacttgcacaataaacaccagtatccatttgtt
gtccttaatattggagtagattccgagtgtgttgacatcaatgtaactcctgacaaaagg
caaattttacttcaggaggagaagtttttattagcaattctaaagacttctctgctggag
atgtttggtagtgatgttaacaaactgaatgtcaatcagaaacttctggacattgcaggt
aacttgaagaagacacttcctgaagagacagaaaagcctcaggcagaaatgccgtctgac
tctgagactgaaaatctgagtggtgaaggcaaaagaacaatggctcttgccagattaaga
gagtcattttctcttcatcaggcaacagaaagtaattttcaaaggtctaaaaaggtaaaa
cagcagcacagttcccctagacagaggttacttgataccactggaagtactgtaaagatt
caaaaggctgtcttgtctaaggaggctgagagttcccctaagttggactcaaaggtgtca
attccaaggagacacttgagaaaattagaagatgctgcagattctggattctgtagcatt
tcggagtcagatgctggatgtagtacaccagaagctggaagctacatcaatagtgaaagt
gcaattaattctgaagaagaatactggagcacagaagaacagatgcagaaggaatgtctt
aaaactgctggatgtagtaagaagtcattggactgtgatgttcaggtcttggacactgaa
cccaagctagatcaagtgaatgactggactgatcaaaacaagttttctcaaaaagtcaag
agttgttccccaagagtaaaacattttaaaagcagaaactttaaaagtgaagcagatgat
tccaaggcaggtaaatatcccgaagtgaagaacactagtgttgatgtactggtggaagtt
aaaaagaaaattgtgcctcttgaattctctatgaaggttttggcagaaaaggtaaaaaag
ctaatacagcaacaacagaaaaatacagaaactgaaaattacagaagatttaaagcaaaa
atcagtcctggggacaataaagtagcagaagatgaattaagaaaagagatcagtaaagaa
atgtttgcaaaaatggaaatcattggccagttcaatttagggtttataatagcaaagttg
aattctgatcttttcataattgaccaacatgctactgatgagaaatacaactttgagatg
ttgcaacaacacactgttctccaaggtcagaagctgatagtgcctcaaaatctcaattta
acagcagtaaatgaaactgtgttgattgaaaacatggaaatattcagaaaaaatggcttt
gattttgtcataaatgaaaatgctcctgtaactcaaagagttaaattggtatcattgcca
acaagcaaaaactggactttcggtccacaagacatagatgagctgatcttcatgttgagt
gactgccctggggtgatgtgcaggccctccagggtcagacaaatgtttgcttctcgagct
tgcaggaagtctgtaatgattggaactgcactgaatgtgcaggaaatgagaaaactgatc
acccatatgggtgagattgagcatccctggaactgcccccatggaaggcctactatgaga
cacatagtcagtttagacttgatttcaccagaataa
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