Sylvia atricapilla (blackcap): 136368167
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Entry
136368167 CDS
T10263
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
136368167 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sati01001
]
136368167 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sati04054
]
136368167 (CIITA)
Enzymes [BR:
sati01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
136368167 (CIITA)
Protein kinases [BR:
sati01001
]
Serine/threonine kinases: Other
TAF1 family
136368167 (CIITA)
Pattern recognition receptors [BR:
sati04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
136368167 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
NB-ARC
LRR_14
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
UreE_C
Silic_transp
AAA_19
AAA
Motif
Other DBs
NCBI-GeneID:
136368167
NCBI-ProteinID:
XP_066186347
LinkDB
All DBs
Position
15:13594570..13616119
Genome browser
AA seq
1123 aa
AA seq
DB search
MDSVFMPENGYLDLLHSDIDPLHLCTFFDPKSSGDEGDFSTDLEVDASNYEQVNNVDFPY
ENGDGFYPCSNTTDAYAKVAELVEYVLKDQQEKQVEDIFAGDLILDDIVADSTEKFPDIK
KQTCLKRTFLGSAAESYCDASEPKYKKIVEVPAVSGGNGSFFAMPLNSHPVSCPSLTNQH
MSFSVPAAHGLERSLIIPGLSEHLTSECLPGSVKGYQENPGLADPPQQIFNFVLENGTSN
VIVYPVLTSSMETFMSPSIPVNLCAQHTYATSPGTPDAAVDKLTYLEEFQEVQDLIIPSE
EPFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDRTLVQSQTETKTGKNSAKA
MEKELVICSLQEKEKTAIDRSQIFQIPQRKDLETKVIVVLGKAGMGKSILVQKICQDWSN
GEFSQFEFVFWFDCKQISLPEKLYSLQKLLLEFFVKPREGSKEIFEYILQNPAKVLLIFD
GFKELHDHENSPRSSASHPEKDLCSVKELLSGLIQKKILNGCTLLFTARPKDKLYQYVSK
VDKTIEIVGFSPQQRELYITRYFEESSYCDSALKLIRECEYLFSHCYSPVMCRFVCFLCE
AVLEMGEKSLPSTLTEVFLKFFQQKIMLMQTDVTATQNQESLAALARIAWHLGEKHQSAM
KSDLIPSKEVKEFALKYGFFLPFAFPRHSDSEEEEFGSTFSDFVVQNFLCALHLLLAEEL
KDKNLTKYLSFLSKKKKPYNWLDLMPRFLVGLMYLQEDPYFCSLSNEDAKQSTKKQKTLL
KYIRRLQMNTLCPERLLELLCCVYETQNNYLMQHVALRLEPDLSFLGIALTPPDVHVLLS
ILKRSRKEFSLDLRNSSIDMQGLQALVSLRNVTSFRASLSDTVRLWKSLKQAKDYELLKA
STEKFILDPFKAKTMKDINDLSDLVKMQDKMMNCVQEESGCSSYGIPAIRNLRKLEFALG
PACGLQGLQKLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQN
KITDVGAENLATALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMRSLRVLDVQYNKITG
VGAQQLTDSLRKCPHIKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtatttatgcctgaaaatggctaccttgatttactgcacagtgatattgat
ccattgcatctgtgtactttctttgatcctaagtcatctggagatgaaggtgatttctct
acagatcttgaagttgatgccagcaactatgaacaggtaaataatgtggatttcccatat
gaaaatggagatgggttctacccctgttccaacaccacggatgcttatgctaaagtagct
gaactagtagaatatgtgctcaaggatcagcaagagaagcaggtcgaagacatttttgca
ggggaccttattttggatgacatcgttgctgacagcactgagaagtttcctgacatcaag
aagcagacatgtctgaaacgaactttcttaggctctgcagcagagagttactgtgatgct
tcagaacccaaatataagaaaattgtggaagtccctgctgtgtctggagggaatggcagt
ttctttgctatgcctctcaacagccacccagtgagctgcccctccctgactaaccagcac
atgtccttttctgttcctgctgcccacgggctggaaagaagcctcataattcctggattg
tcagaacatttgacctcagagtgcctaccaggcagtgtgaaagggtaccaagagaatcca
ggcttggcagatcctcctcagcagatatttaactttgttcttgaaaatggcacatctaat
gttatagtatatccagtgctgacatcttccatggaaacattcatgtctccaagtattcca
gttaatttatgtgcacaacatacatatgccacaagccctggaactccagatgcagcagtg
gacaaattaacatatttagaggaatttcaagaagttcaagatttgataattccttctgaa
gaacctttcaaaagaccagagcaagtggaaaccttctgctcatcccttaaagattatttc
cgagacacgtgcaaatctgtgaccatggagagggaagtaaatctggatcacctgttcatt
gataggacacttgttcaaagtcaaactgaaaccaagactgggaagaacagtgcaaaagca
atggaaaaggagctggtaatctgcagcctgcaagagaaggaaaagacagccattgataga
agccaaatatttcaaatcccacagcgtaaagacctagagactaaagtgattgtggtgctg
ggaaaagcaggaatgggcaaaagcattctggttcagaagatctgccaggactggtccaat
ggagagttttctcagtttgaatttgtattttggtttgactgcaaacaaataagtttgcct
gagaagctatacagcctgcagaaactgctgcttgaatttttcgtaaaacctcgagaggga
agcaaagagatctttgagtatatattgcaaaatcctgctaaagtccttctgatttttgat
ggttttaaagaattgcatgatcatgagaattctcctcgttcctcagccagccatcctgaa
aaggatttgtgcagtgtaaaggagctgctttcaggactcatccaaaaaaagatactcaat
ggctgtactttattatttacagcaagaccaaaagacaaactgtaccagtatgtgtccaaa
gtggataagactattgaaatagtaggattttcccctcagcagagagaattgtacataacc
agatattttgaagaatcatcctactgtgatagtgcactgaaattaatcagagagtgtgag
tacttgttcagtcattgctacagccctgtcatgtgtagatttgtttgttttctctgtgag
gcagtgcttgaaatgggagagaaaagtcttccttcaactcttactgaagtcttcctcaaa
ttttttcagcagaagataatgcttatgcaaacagatgttacagccacacaaaaccaagag
agtcttgctgccctagcacgtatagcctggcatcttggagaaaaacaccaaagtgccatg
aaaagtgatcttattccttctaaggaagttaaagagtttgccctgaagtatgggttcttc
ctgccatttgcattccccagacattcagatagtgaagaagaggaatttgggagcacattc
tctgattttgtcgttcagaatttcttgtgtgcacttcaccttttgttagcagaagagctc
aaggataaaaatctaacaaagtacctctctttcctatccaagaagaaaaaaccttataac
tggttagatttaatgcctcgattcttggttggtttgatgtatctccaggaggacccctat
ttctgctctctttcaaatgaggatgcaaaacaatcaaccaagaagcagaagacactcttg
aaatacattagaaggctgcagatgaatactctctgtccagagaggttgctggagctttta
tgttgtgtttatgaaacacagaacaattatcttatgcagcatgtggccttaagacttgaa
ccagacttgtcttttctgggcatagctcttacaccacctgatgtccatgtgctgctctct
attttgaaaaggtcaagaaaagagttttccttggatctgcgaaacagcagcattgacatg
caagggctgcaggccttggtcagcctgaggaacgtgacatcattcagggcctccctcagt
gacacagtcagactctggaaatctttaaaacaggcaaaagactacgaactgctgaaagca
tccacagagaaatttatccttgatccctttaaggcaaagacaatgaaggacatcaatgat
ctctccgaccttgtaaagatgcaggacaagatgatgaattgtgtgcaagaagaatctggt
tgcagcagctatggaattcctgccatcagaaacctcaggaaactggaatttgcgctgggt
ccagcatgtggccttcaaggactgcaaaaactcgtgaaaattcttgcagcattcccatca
cttcagcatttagaccttgatgctctgagtgaaaatggcataggagatgaaggtgcaaag
agcctatctgaagtttttccaaccctgacatcactggagacattaaatttatcacagaat
aaaataacagacgtgggtgcagagaacctcgctacagctctcccttccttgtcttccttg
aaaacactaagcttgtacaataacaacatttgtgattttggagcagaaaatctggcaaag
gttcttcctgcaatgagatctttaagagtgctagatgttcagtataacaaaataactggt
gttggagcccagcagctgactgacagcctacgaaaatgtccccatataaagaacttggtg
atgtggaatcccaccattccctatggggttcttgaacaccttcaccagctggactctagg
atcagtgtgtag
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integrated database retrieval system
