KEGG   Sylvia atricapilla (blackcap): 136368632
Entry
136368632         CDS       T10263                                 
Symbol
RAE1
Name
(RefSeq) mRNA export factor RAE1 isoform X1
  KO
K14298  mRNA export factor
Organism
sati  Sylvia atricapilla (blackcap)
Pathway
sati03013  Nucleocytoplasmic transport
sati05164  Influenza A
Brite
KEGG Orthology (KO) [BR:sati00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    136368632 (RAE1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    136368632 (RAE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sati03019]
    136368632 (RAE1)
   03036 Chromosome and associated proteins [BR:sati03036]
    136368632 (RAE1)
Messenger RNA biogenesis [BR:sati03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     136368632 (RAE1)
Chromosome and associated proteins [BR:sati03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    136368632 (RAE1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_EML_2 WD40 Beta-prop_WDR3_1st WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_TEP1_C Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_RSE1_2nd Beta-prop_EIPR1 Beta-prop_ACSF4 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_Nup120_160 NBCH_WD40 Beta-prop_SPT8 PepSY
Other DBs
NCBI-GeneID: 136368632
NCBI-ProteinID: XP_066187071
LinkDB
Position
16:complement(12205961..12251941)
AA seq 368 aa
MSLFGSTSGFGTGGTSMFGSTTADNHNPMKDIEVTSPPDDSISCLAFSPPTLPGNFLIAG
SWANDVRCWEVQDNGQTIPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQA
IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSPTPMMTLQLPERCYCADVVH
PMAAVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKVNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagtctgttcggatcaacgtcggggttcggtaccggaggtaccagcatgtttggcagc
acgacagcagataaccacaaccccatgaaggatattgaagtaacatctccacctgatgac
agcatatcttgtttagcatttagtccaccaacgctgccgggtaatttcctcattgcagga
tcatgggcaaatgatgttcgctgctgggaagttcaggataatggacagacaattccaaag
gctcagcagatgcacacagggcccgtcctggatgcctgctggagtgatgatgggagtaag
gtatttactgcttcctgtgataaaactgccaaaatgtgggatctcaacagtaatcaagca
attcagattgcacagcatgatgctcctgtgaagactatccattggattaaagcaccaaat
tacagctgtgtgatgacaggaagctgggataaaactttgaagttctgggatacccgttca
ccaacacccatgatgaccctgcagctccctgagagatgttactgtgcagatgtggttcat
cccatggcagctgtggccactgcagaaaggggtttgatagtttatcagttagagaaccaa
ccttctgaatttagaagaatagaatctcctctgaaacaccagcatcgttgtgttgctatt
ttcaaagacaaagtgaacaaaccaactgggtttgcccttggaagtattgaaggcagagta
gctattcattatatcaaccccccaaaccctgcaaaagataatttcacttttaaatgccat
cgctccaatggaacaaacacttcagcacctcaggacatctatgctgttaatgggattgca
ttccaccctgtccatggcactctggccacagtagggtctgatggcagattcagcttttgg
gataaagatgcacggacaaagctaaaaacctcagagcagctggaccagcccatatctgct
tgttgtttcaatcacaatggcaatatatttgcttatgcttccagctatgattggtcaaag
ggtcacgaattctataatccacagaagaaaaactacattttcctgcgaaatgcagcagag
gagctgaagcccaggaataagaagtag

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