Sylvia atricapilla (blackcap): 136368810
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Entry
136368810 CDS
T10263
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03030
DNA replication
sati03410
Base excision repair
sati03420
Nucleotide excision repair
sati03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136368810
03410 Base excision repair
136368810
03420 Nucleotide excision repair
136368810
03430 Mismatch repair
136368810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sati03032
]
136368810
03036 Chromosome and associated proteins [BR:
sati03036
]
136368810
03400 DNA repair and recombination proteins [BR:
sati03400
]
136368810
DNA replication proteins [BR:
sati03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
136368810
DNA Replication Termination Factors
ELG1-RFC complex
136368810
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
136368810
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
136368810
Check point factors
HRAD17(Rad24)-RFC complex
136368810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_22
AAA_16
AAA_24
AAA_11
AAA_lid_RFC1
AAA_assoc_2
nSTAND_NTPase5
DEAD
AAA_14
ResIII
RuvB_N
DUF815
AAA_5
AAA_30
AAA_19
DNAX_ATPase_lid
PhoH
TniB
AAA_7
TIP49
ATPase_2
nSTAND3
AAA_25
Thioredoxin_6
IstB_IS21
bpMoxR
AAA_28
Gp44_lid
UBA_Rad5
Hydantoinase_B
Motif
Other DBs
NCBI-GeneID:
136368810
NCBI-ProteinID:
XP_066187304
LinkDB
All DBs
Position
17:complement(1688162..1690558)
Genome browser
AA seq
329 aa
AA seq
DB search
MAPAGSANLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVSEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADIEYR
LAAGTSEKIQLSSLIAAFQVTRDLVVAEA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgggcagcgcgaacctgccgtgggtggagaagtaccgtccgcaggcgctg
tccgagctggtgtctcaccgggacatcctcagcaccgtgcagcgcttcatcagcgaggac
cggctcccccatctgctcctctatgggccgcccggcaccgggaagacatccaccatcctg
gcctgtgccaggcaactgtaccgggagcgggagttcggctccatggtgctggagcttaat
gcttctgatgaccggggcatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggcttcaagcttgtcatcctggatgaagccgatgccatgacc
caggatgctcagaatgccctgaggagagtgatcgagaagttcacagaaaacacccggttt
tgcctcatctgcaactacctctccaagatcattcccgccctgcaatcccgctgcacccgc
ttccgcttcggccccctgaccccggagctgatggtgccgcggctgcagcacgtcatccag
gaggagggggtggatgtgagcgaggacgggatgaaggctctggtgaccctctccagcggg
gacatgcgcagggccctcaatatcttgcagagtacctccatggcctttgggaaggtgaca
gaggagaacgtttacacctgcacggggcatcccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggatttttccaccgcctaccgcaaaatcatggagctgaagacg
ctgaagggcctggccctgcaggacatcctcactgagatccatctcttcgtgcacagagtc
gacttccccccctccatccgcatccagctgctgatcaagctggcagacatcgagtaccgc
ctggctgctggcacaagcgagaagatccagctgagctccctcatcgctgccttccaggtc
acgagggacctggtggtggctgaagcctga
DBGET
integrated database retrieval system
