Sylvia atricapilla (blackcap): 136369481
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Entry
136369481 CDS
T10263
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136369481 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sati03041
]
136369481 (DDX5)
03009 Ribosome biogenesis [BR:
sati03009
]
136369481 (DDX5)
Enzymes [BR:
sati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136369481 (DDX5)
Spliceosome [BR:
sati03041
]
Complex A
U1 snRNP components
U1 related factors
136369481 (DDX5)
Complex B
136369481 (DDX5)
Ribosome biogenesis [BR:
sati03009
]
Eukaryotic type
Pre-60S particles
Helicases
136369481 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
136369481
NCBI-ProteinID:
XP_066188447
LinkDB
All DBs
Position
18:11256198..11263584
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AA seq
604 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTAQEVEQYRASKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLVEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKTQNGAYSAQSFSNGTPFGNGF
AAAGMQAGFRAGGNPAGAYQNGYEQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPT
SYSQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtttggagcccctcgttttggaggaagt
agaggtggacctctctctgggaagaaatttggaaaccctggggagaaacttacaaaaaag
aaatggaacttggatgagctgcctaaatttgagaagaacttttaccaggaacatccggat
gtagtcagacgtactgcgcaagaagttgagcagtacagagcgagcaaagaggtcacagtt
aggggccataactgtccaaaaccaattatcaacttttatgaagcaaacttccctgcaaat
gtcatggaagtaattcagaggcagaacttcactgaaccaactgctattcaggcacaaggt
tggcctgttgcattgagtggattggatatggttggagtggcacagactggatcagggaaa
acactctcttacttactgcctgccattgtgcatataaatcatcagccattcctggagcga
ggagatggacctatttgtcttgtgttggcaccaacccgtgagctggcccagcaagtgcag
caggtagctgctgaatacagcagagcgtgtcgtttgaagtccacgtgcatctacggaggt
gctccaaagggaccacagatccgtgacctggagagaggtgtggaaatctgcattgcaaca
cctggaagactcatagacttcttagaggctggaaagaccaatctcaggagatgtacttac
ctggtccttgatgaggctgacaggatgcttgatatgggatttgaacctcagatcagaaaa
attgtggatcagatcagacctgacagacagactctgatgtggagtgccacatggcctaag
gaagtgaggcagctggctgaagatttcctgaaagaatatgtgcacatcaacattggtgca
ctggaactgagtgcaaaccacaacattcttcagattgtggatgtgtgtcatgatgtagag
aaagatgacaagcttattcgtttgatggaagaaatcatgagcgagaaggaaaacaaaaca
attgtttttgtggaaaccaagaggcgttgtgatgatctcaccagaaaaatgaggagagat
gggtggccagcaatgggtattcacggtgataaaagtcagcaggagcgggactgggttcta
aatgaattcaaacatggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatacacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaatcccaaattgcttcagctggttgaagacagaggttcaggtcgttcccga
ggtgaccgacgtgacagatactctgcgggcaaaaggggtggatttagtagttttagagag
agggagaactttgagagaacctatggcgcgctaggcaagagagacttcggcgccaagacc
cagaacggggcgtacagcgcccagagtttcagcaatggcactccctttgggaatggcttt
gcagctgcaggcatgcaggccggcttcagggccggcggtaacccggcaggagcgtaccag
aacggctacgagcagcagtacggcagtaacattgccaacatgcacaacggcatgaaccag
cagcagtacgcctaccctgccactggtgctgctcctatgataggttaccccatgcccacc
agttactctcaataa
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