Sylvia atricapilla (blackcap): 136369793
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Entry
136369793 CDS
T10263
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha
KO
K08524
retinoid X receptor alpha
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03320
PPAR signaling pathway
sati04148
Efferocytosis
sati04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
136369793 (RXRA)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
136369793 (RXRA)
03320 PPAR signaling pathway
136369793 (RXRA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sati03000
]
136369793 (RXRA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sati03310
]
136369793 (RXRA)
Transcription factors [BR:
sati03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
136369793 (RXRA)
Nuclear receptors [BR:
sati03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
136369793 (RXRA)
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GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
136369793
NCBI-ProteinID:
XP_066188962
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Position
19:8030359..8127380
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AA seq
467 aa
AA seq
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MDTKHFLPLDFSNQVNSTSLNSPTSRGPMATPSLHPSIGPGIGSSLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPSTPSLGFGTSSPQLNSPMNSVTSTEDIKPPLGLNG
VLKVPAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS
KMRDMLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaaacacttcctgccgctggatttctccaaccaggtgaattccacgtccctg
aactcgcccacgagccgggggcccatggccacgccgtccttgcacccgtccatcgggccg
ggcatcggctcctcgctgggctccccgggccagctgcactcgcccatcagcaccctgagc
tcgcccatcaatggcatgggcccccccttctccgtcatcagctcccccatgggcccacac
tcgatgtctgtcccctccacgcccagcctggggttcggcaccagcagcccgcagctcaac
tcgcccatgaactccgtcaccagcacagaagacatcaagccacccctggggctcaatggg
gtcctcaaagtgccagcacatccctcaggaacgatggcctccttcaccaagcacatatgt
gccatctgcggggacagatcttcgggtaaacattacggggtttacagctgtgagggctgc
aagggcttcttcaagcgcacggtgaggaaggacctgacctacacgtgcagggacaacaag
gactgcctgatcgacaagcgccagcgcaaccgctgccagtactgccgctaccagaagtgt
ctggccatgggcatgaagagagaagccgtgcaggaggagaggcagcggggcaaggaccgc
aacgagaacgaggtggagtccacgagcagcgccaacgaggacatgcccgtggagaagatc
ctggaggctgagctggccgtggagccaaagacagagacctacatcgaggccaacatgggc
ctgacacccagctcgcccaatgacccggtgacaaacatctgccaggctgcagacaaacag
ctcttcaccctggtggagtgggccaagaggatcccccacttctccgagctgcccctggat
gaccaggtcatcttgctcagagcagggtggaacgagctgctcatcgcctccttctcgcac
cgctccatcgcggtcaaggacgggatcctgctggccacggggctgcacgtgcaccgcaac
agcgcccacagcgccggcgtcggggccatcttcgacagagtactgacagaactggtgtcc
aaaatgagggacatgctgatggacaagacagagctgggctgcctgcgagccattgtcctc
ttcaaccccgactccaagggcctctcgaacccggcggaggtggaggcgctgcgggagaag
gtgtacgcgtcactagaggcttactgcaaacacaaataccccgaccagcccggcaggttc
gccaagctcctgctccgtctcccagctcttcgatccatcggcctgaaatgcctggagcac
ctcttcttcttcaagctaataggcgacacgcccatcgacaccttcttgatggaaatgctg
gaagcgccgcaccaaatgacttaa
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