Sylvia atricapilla (blackcap): 136369848
Help
Entry
136369848 CDS
T10263
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sati Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sati03000
]
136369848 (RC3H2)
04121 Ubiquitin system [BR:
sati04121
]
136369848 (RC3H2)
Transcription factors [BR:
sati03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
136369848 (RC3H2)
Ubiquitin system [BR:
sati04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
136369848 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
136369848
NCBI-ProteinID:
XP_066189040
LinkDB
All DBs
Position
19:complement(9736796..9763002)
Genome browser
AA seq
1192 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTAGNVISVI
GSPEATGKMVPSTNGIANLETGVPQLIPRCTDTSLRALENTKKGGKAGANGQNASGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSPFVPRVPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPAPPTVPAGVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPM
DVMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQ
WAQYHTQKTPLVSSTLPMATPSPTPPSPLFSVDFSTEFSESVSDLSGTKFEEDHLSHYSP
WSCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSD
GPIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSAYGSDS
ASSARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSL
DEGSRLTLNLLSKEIDLRNGETDYPEDCADTKPDRDIELELSALDTDEPDGQGEQIEEIL
DIQLGISSQEDQLLNGTTVENGHLLKQHQKDSMEQKRQSLGEDLVILEEQKTILPVTSCF
SQPITTSVSNASCLPISTSVSVGSLILKTAHIMSEDKNDFLKPVANGRMVNS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaattcctgtcctgcccaatctgctacaatgag
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacaccgtgtgcaagacc
tgcctgaacaagctccatcgcaaggcatgtccttttgaccagactgccatcaacactgac
atcgatgtgcttcctgtaaactttgcactcctccagctggttggagcccaggtacctgat
catcagacggttaagttgagtaatgtaggagagaacaaacactatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgcaagc
ttgaatcagagtgcactgagccgtcccatgcagaggaagcttgtgacactggtgaattgt
cagctggtggaggaggagggtcgggtcagagccatgagggcagctcggtcgctgggagag
agaactgtcacagagctcatcctgcagcaccaaaatcctcagcagctttctgccaatctt
tgggctgctgtcagggcacgagggtgccagtttctaggaccagctatgcaagaggaggca
ctgaaacttgtattgctggcactggaagatggctctgcactctcaagaaaagttctggta
ctttttgttgtgcaaaggctggaaccaagatttcctcaggcctctaaaacaagcattggt
catgttgtgcagctactgtatagagcatcatgctttaaggtcactaaaagggatgaagat
tcttctctgatgcaacttaaagaagagttccggagttacgaggctctgcggagagagcac
gatgcccaaattgttcacattgccatggaagcaggactcagaatatcaccagagcaatgg
tcttcccttctttatggagacctggcgcataaatcacacatgcaatccattattgacaag
cttcaatctccagaatcttttgctaagagtgtacaagaattgacaattgtcttgcagcgc
acgggggatcctgcaaacttaaacaggctgaggcctcatttagagctcctggcaaacata
gatccaaatccagatgcagcatctccaacgtgggagcagctggaaaatgcaatggtcgcc
gtaaagaccgtggtccacgggctggtggatttcattcagaattacagtagaaaaggccat
gaaactccacagccacaaccaaacagcaaatacaaaacaagtatgtgccgagaccttcga
cagcaaggggggtgtccaagaggaacaaactgtacatttgctcattctcaggaagagctt
gaaaaataccgcttgaggaacaaaaaaatcagcgcaacagtgagaacattcccccttctc
aataaagtgggcgtcaacagcaccgtctccaccacagcagggaacgtgatctctgtcata
ggaagccctgaggcaacgggcaagatggtgccaagtactaatggaatagccaacctggaa
actggggtgccccagctgatcccccgctgcacagacacctccctgagagctctggagaac
accaagaagggagggaaggctggagccaacggccagaacgcttctgggtcccctacagaa
tcacttcctgagaataaaattggttctccacccaagactcctgtaagccaggcagcagct
acctcagctggtcctcctaatattggaacagaagttaattctgtgcctccaaaatccagc
ccgtttgttcccagagtacctgtctaccctccacattctgataatgttcaatatttccaa
gatcccaggactcagctgtcatacgaagttccacagtacccacagacaggctattatcca
gcacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aacgttccagaatcctctctcccacctgcttccgtgccatatgccgatcattacagtaca
tttccccctcgggatcgactgaattccccctaccagcctcctcctcctcctcagccctac
ggaccagtccctcctgtcccctctggaatgtacgctccagtctacgacagcaggcgcatc
tggcgcccgcagatgtacccacgggatgatatcattaggagcaattcgttacctcccatg
gatgtgatgcactcatctgtctatcagacatcgttacgggagaggtacaactctctggat
gggtattactctgtggcttgtcaacctccaaacgagcagaggactgtgcctttaccgagg
gagccttgtggtcatttgaagactggttatgatgagcagctgagacggaagccggagcaa
tgggcacagtaccacacacagaaaactcctctggtatcctcaacccttcctatggcaaca
ccatctccaacaccaccttctcctctcttcagtgtagatttcagcacagagttctcagag
agtgtcagtgatttgagtggaactaaatttgaggaagaccatctctctcactattcaccg
tggtcttgtggcactattggctcttgtataaatgctatcgactcagagcccaaggatgtg
attgccaattccaatgccgtgttaatggatttggacagtggagatgttaagaggagagtg
catttatttgaaacgcagagaagggcaaaggaggaagatcctataatcccgttcagcgac
ggacccatcatctccaagtggggtgcaatctccaggtcatcccgcacaggttatcacaca
acagatccaatccaggccactgcttcccaaggaagtgctactaagcccatcagtgtatca
gattatgtcccttatgtcaatgctgtggactcaagatggagtgcctatggctcagattct
gcctcctcagcacgttatgcagaacgggacaggttcatagttacagatttgtctggtcac
agaaagcattccagcactggagatctactgagtattgaattacagcaggccaaaagcaac
tccttactccttcagagagaggcaaatgcacttgccatgcagcagaagtggaattctcta
gatgaaggcagtcgtcttaccttaaaccttttaagcaaggaaattgatttgaggaatggt
gagactgattatcctgaagactgtgcagacacaaagccagaccgagacattgaattggag
ctgtcagccctcgatacagacgaacctgatgggcaaggtgaacagatagaagagattctg
gacatacagctagggatcagctcccaagaggatcagctgctcaatggaacaaccgtggag
aacgggcatctgctaaagcagcaccagaaagattctatggaacagaagagacaaagttta
ggtgaagaccttgtgattctggaggagcagaaaacaatcctgcccgtaacttcttgcttc
agtcagccgatcacaacatctgttagcaatgcaagctgcctgcccatcagcacatcagtc
agtgttggcagcctcattttgaaaactgctcacattatgtctgaggataaaaatgacttt
ttaaagcctgttgcaaatggcaggatggttaacagctga
DBGET
integrated database retrieval system
