Sylvia atricapilla (blackcap): 136370065
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Entry
136370065 CDS
T10263
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03410
Base excision repair
Brite
Enzymes [BR:
sati01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
136370065 (LIG3)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
136370065 (LIG3)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136370065
NCBI-ProteinID:
XP_066189370
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Position
20:complement(5330299..5344886)
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AA seq
983 aa
AA seq
DB search
MPTGGRTLSHAARALGRGTALLCPRPQLPSPRPFSCSAGVSPGCWCQLLFRPVSVPSPKQ
RRAAGAFPISLLLGGWLRSACAAAGAMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKETINKYI
SEANSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFSAKPKNSEDAPANPAPKASLS
AARCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKML
LPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
VLTIQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQQEAEKVPGMKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWQSATNLQQLKELYQLSKEKADFSVTAGEEDESTA
GSSGENDGNSRSSTPHSSIKSPPNKTPTKAQKAEESKGVIGSPQKSEEKRGEKRKASEME
DNGKKQPLLDIFTGVRLYLAPSVKDFARIRRYFIAFDGDLVEEFDTASATHVIGDMEDNP
GAQRVTPRWIWECIRKRRLVAPC
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcaggacgctgtcacacgccgcccgcgctctcggcaggggcactgcg
ctgctctgccctcgcccacagctcccctcgcccaggccgttctcctgctctgccggagtc
agccccgggtgctggtgccagctgctgttccggcccgtctccgtgccgtccccgaagcag
cgccgtgctgccggcgcttttcccatctccctgctgttgggcggctggctgcgctccgcc
tgcgcggctgcgggggccatggcagagcagcggtactgtgtggactatgccaagcgaggc
accgcgggatgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaag
attgttcccaatcctttcaccgagtccggaggggacatgaaggagtggtaccatgtcaag
tgcatctttgagaagctggacaaggcccgggccaccaccaagaaaattgaagacatcaca
gacttggaggggtgggaagagttgcaggatgaggagaaagaaacaatcaacaagtacatc
tcagaagccaattccaagactgggggtaccccgaagaaaaaggtgatagtgcaggcaaaa
ctcactgccacagggcagctgaccacaaaagatccaccaaagaaattctctggattctct
gccaagccaaagaattcagaagatgcccctgcaaaccctgcccccaaggccagcctgtca
gcagccaggtgtgaccccaagcacaaggactgcctgctgcgggagttccgcaagctctgc
gccatggtggccgaaaagcccagctacaacgtcaagactcagatcatccaggacttcctc
aggaagggatctgcaggagatggctttcatggtgatgtatacctgaccattaagatgctg
ttaccaggtgtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agcaggatttttaactgcagccaggaagaaatggtccgggacctggagcagggagatgtt
tccgagaccatccggatcttctttgagcagagcaagacgtgtcctccagcagccaagagc
gtcctgaccatccaggaggtcgatgaattcctcatccagctgtccaagctcaccaaggaa
gatgaccagcagagtgtcctgcagcagatcagtcgcaggtgtacgggcaacgacctgaag
tgcatcatcaggctcattaagcacgacttgaaaatgaacgctggagcaaagcacgtgctg
gacgctctggatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtg
gtggagcgggtgctgcagaaccagcaggaggccgagaaggtgccggggatgaagaggacc
ctgagcgtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgtaag
tccatcgagtatgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgac
ggcgagcgcgtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctc
aaacctgtgctgccccacaaagtagcccattttaaggatttcatcccccaggcattccct
ggtgggcagagtatgatcctggattcagaagttctcctgattgacaataaaactggcaag
ccacttccttttgggactcttggtgtacacaagaaagctgctttccaggatgccaacgtt
tgcctgtttgtgtttgactgcatctacttcaatgacatcagcctgatggacaggcccctg
tgtgagcggcgcaagttcctgcacgacaacatggtggagatccccaacaggatcctgttc
tcggagatgaaacacgtcactaaagcctcagatctggcagacatgatcacccgagtcatc
cgggaggggctggaggggctggtgctgaaagatctaaagggaaattacgagccagggaaa
cgccactggctgaaggtgaagaaggattacctcaacgagggggcaatggctgacacagct
gacctggtggtgctgggggctttctatggacaaggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctacgaccccaagagtgaaaagtggtgcacggtgaccaagtgctct
ggtggccacgatgatgccaccctggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaggccccggtgtgggagatcacgggggcagagttctcc
aaggccgaggcgcacacggcggacgggatctccatccgcttcccgcgctgcacccgcatc
cgcgacgacaaggactggcagagtgccaccaacctgcagcagctcaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgttacggctggggaggaagatgagtccacagct
ggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtattaag
agtcctccaaacaagactcctacaaaagcccagaaggcagaagagagcaaaggagtcatt
ggatcccctcagaaatccgaggagaaacgaggggagaagagaaaagcatccgagatggag
gacaacggaaaaaagcagcccctgctggacattttcacgggggtgaggctgtacctggcg
ccctcggtgaaggactttgcgcgaatccgccgctacttcatcgccttcgacggggacctg
gtggaggagtttgacacggcctcggccacccacgtcattggggacatggaggacaacccc
ggggcacagagggtgaccccccgctggatctgggagtgcatccgcaagcgcaggctggtg
gccccctgctag
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