KEGG   Sylvia atricapilla (blackcap): 136370375
Entry
136370375         CDS       T10263                                 
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
sati  Sylvia atricapilla (blackcap)
Pathway
sati04382  Cornified envelope formation
sati04510  Focal adhesion
sati04512  ECM-receptor interaction
sati04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sati00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    136370375 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    136370375 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    136370375 (COL4A6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    136370375 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sati04147]
    136370375 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:sati00536]
    136370375 (COL4A6)
Exosome [BR:sati04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   136370375 (COL4A6)
Glycosaminoglycan binding proteins [BR:sati00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   136370375 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 136370375
NCBI-ProteinID: XP_066189835
LinkDB
Position
21:7959206..8061042
AA seq 1692 aa
MGRTGALLLLLLCLGADTATAGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLQGP
IGAPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQAGPRGR
PGLDGCNGTSGSSGISGPDGFPGLPGLPGRPGPKGLKGEPVFAQGSLKGMKGENGLPGLD
GVPGPKGFPGPVGPAGPIGLPGLRGPVGPPGPPGAKGNMGLGFQGEKGEKGDVGLPGPPG
PPPSTGILEFMGFPKGKQGEKGEPGPQGFPGSQGFPGVPGFGGVGEKGEKGVPGLPGGRG
LLGLDGSEGIPGRKGHPGLPGYPGLDGVEGMKGELGDIGPPGPPVIIDREGVVISGAPGD
PGNPGVPGPPGDEGIIGLPGLPGAPGFPGLERDGMGPGGSPGIPGLKGEVGEPGRATIGI
PGPPGRGGLPGLPGAPGLPGAPRPSLSPVIILKGRTGAPGEPGPRGLPGALGPKGYKGEA
GDCACDGGVTRPGLKGVSGPPGPSGSPGVPGAKGLGGDPGSVGAPGLRGPSASAGQQGPP
GLKGEKGAPSYATVKGARGDRGATAPRGAAGTPGAPGRDGLPGLPGPPGPPGDGGLGFPG
EKGLPGLPGSKGYRGEPGSPGIGYPGPSGVRGAPGDTGIDGFPGQPGLPGPPGITLPCIV
PGAYGPPGNPGFPGLPGLKGSKGFSGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGE
QGSQGLPGLDGTDGLPGKVGASGLAGIKGSPGDVFGAESGSLGERGRPGLPGDKGLTGDI
GFPGPKGLDGRPGLLGVKGEQGHPGYSGGPGLRGPPGPGGPFGIKGKPGPLGSAGLAGAP
GPPGAKGVAGDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPFGQDGHPGFSGPKGEK
GSSGLLGFPGMPGLPGVPGVNGLKGAPGTAGGKGSPGVGGLQGQKGDRGDIGPPGLPVIG
TSEQALQIKGDKGDPGLAGLGGFPGPRGDKGAPGSRGQPGVPGPAGSPSKERGAHGDPGF
PGPPGTPGLPGQKGAHGIMGFPGMPGERGSDGTTGTLGFPGPFGLPGPKGDQGESAGVPG
IAGLKGERGDPGFPGERGREGLKGEPGYPGNTGVNGPKGSPGDLGQEGPAGIPGNAGLRG
APGPPGPPGQPGPVGFPGARGAAGPKGFHGFPGLSGLNGLPGTKGSPGTPGLSEVGLKGP
AGLPGTKGEEGSPGLGRGAAGFPGPKGSAGDMGPPGPVGLPGLPGTPGVSLPSDIPGRPG
DAGVPGTDGSPGFPGLPGPRGPPGPASDQGDTGTPGFPGVLGLRGIKGDVGPTGAVGLPG
ASGFKGARGEPGLMGMPGKDGPPGDPGYAGLKGEMGPRGLPGRPGAPGITPQPEEVTAPA
GLPGLPGIDGVPGFDGDPGFHGPAGKPGPKGLPGRSGLKGRDGFPGTPGIAGDPGPSGAP
GPQGFQGVAGLPGSPGLPGMPGRSVGVGYTLVKHSQSEQIPPCPVGMSKLWDGYSLLYVE
GQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSL
QIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLV
SPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLSTVEQQQQFVSAPPSETLKAGQLRT
RVSRCQVCMKNL
NT seq 5079 nt   +upstreamnt  +downstreamnt
atggggcgcacaggggcgctgctgctgctgctcctctgcctgggcgcggacacggccact
gcgggtggaaagaagtcctacagtgggccgtgtgggggccgtgactgcagtgctggatgc
aaatgttttccagagaagggtgcacggggtcgaccaggaccgattgggcttcaaggacca
ataggagcacctggatttactggcccagaaggtttgcctggagcaaaaggtgagagagga
gcagtgggccctcctggaccagctggacagaagggtgacaagggtccaatgggagttcca
ggatttcagggcatcaacgggatcccaggtcaccctgggcaggctggacctcgaggcagg
cctggcctggatggatgcaatggcacctctgggagcagtggcatttctggaccagatggg
tttcctggcctgcctggcctgcctggtcgtcctggcccaaaaggccttaaaggagaacct
gtttttgctcaaggcagtcttaaaggaatgaagggtgaaaatggtcttcctggattggat
ggagtgcctggcccaaaaggttttccaggtccagtgggtcctgcaggccctataggatta
ccaggtttgcggggtccagtgggtccccctgggccaccaggtgcaaaaggtaacatggga
ttaggctttcaaggagagaaaggagaaaagggtgatgtagggctgcctgggcctccaggt
cccccaccatccactggaatactggaattcatgggatttccaaaggggaagcaaggagaa
aagggtgagccaggccctcaaggattccctgggagccaaggattccctggcgtcccgggc
tttggaggtgttggagaaaaaggagagaaaggagtgcctggcttaccaggtggcaggggt
cttttgggactggatggatctgaaggaattccagggagaaagggccatccaggtcttcca
ggctatccagggctggatggagttgaaggcatgaagggtgaattaggtgacatcggcccc
ccaggtcctcctgtcattattgacagggaaggtgtagtcatttcaggtgccccaggtgac
cctggaaacccaggagtacctggtcctccaggagatgaagggatcattggtttaccaggc
cttccaggggctccagggtttccaggtctggagagagatggaatgggccctggagggtct
ccaggtattccaggactgaagggtgaagtgggagaaccaggaagagcaacaattggaata
ccaggccctcctggcagaggtggattacctggtctgccaggagcaccaggattgcctggt
gcaccacgtccttcactctccccagtgataatcctaaaaggaaggactggggctccaggg
gagcctgggccaagagggctgccaggagctttgggtccaaaaggctacaaaggagaggca
ggcgattgtgcctgtgatggaggagtgacaagacctggtctcaaaggcgtctcaggtccc
ccaggtccatcaggaagccctggtgtccctggtgccaagggccttggtggggacccaggc
tctgtgggagccccaggactgcgaggcccttcggcttcagctggccagcagggcccccct
ggccttaagggagaaaagggggctccatcctatgccacagtcaaaggagctcgtggggac
cgcggtgcgacggcgcccagaggagccgcagggacccccggggccccgggcagggatgga
ctgccagggctgccaggaccaccaggccctcctggtgatggtggactgggtttcccaggt
gaaaagggtctgccagggttacctggctccaagggctatcgaggagaacctggttctcct
ggcattggatacccaggtcctagtggagttcgtggagcaccaggtgacactggaatagat
ggatttccaggccaaccaggtcttccaggccctccaggtatcaccttgccctgcatagtt
cctggagcatatgggcccccagggaaccctggatttccaggtctgccaggtctcaaaggc
agcaaaggcttttctggcattccaggccagcctgggttacatgggtctaaaggacagcca
gggtctccaggaataataggcttgcaaggggaacctggcttccctggaccccgaggagag
caaggctcccagggactcccaggactggatggaacagatggtttgcctgggaaagtggga
gcttcaggcttagctgggataaaaggatcacctggagatgtatttggtgctgagagtgga
agcctaggggagcgtggccgacctggactcccaggagataaaggccttacaggggatatt
ggatttccaggaccaaaagggctggatggaagaccaggcctgctgggggttaaaggtgaa
cagggtcatccaggatattcgggtggccctggattgaggggacctcctggccctggaggt
ccttttggcatcaaggggaaaccaggacccttgggctcagctggccttgcaggagcacca
ggacctcctggagccaaaggtgtggctggggatgtgggaccacagggccctgctggtatg
aaaggcttcccaggtctggatggtgctccaggatcgcctggggaaagaggattcttaggc
ccacctgggccttttggtcaggatggacatccaggtttctctgggccaaaaggtgagaaa
ggatcttcaggcctgcttggtttccctggcatgccaggactgcctggtgtccctggagtg
aatgggctgaaaggagctcctggcacagctggaggaaaaggaagtccaggagttggggga
cttcaaggccaaaaaggtgacagaggtgatataggtccaccaggtcttcctgtcattggg
acttcagaacaggcactgcaaatcaaaggagacaaaggagatcctgggttagctggactt
ggaggattcccaggacctagaggtgacaaaggagcgccaggaagccgtggacagcctggt
gtccctggcccagctgggtcaccaagcaaagagagaggtgctcatggtgacccaggcttc
cctgggccccctggaacccctggcctgccaggacagaagggtgcacatggcatcatggga
tttccaggaatgccaggagagaggggttcagatggcaccacaggaacacttggattccca
ggaccttttggccttcctggtccaaagggtgatcagggagagtctgctggtgttcctggc
attgctggactaaaaggagagagaggagacccagggtttccaggagagagagggagagaa
gggctcaagggtgaaccaggctacccaggaaacacgggggtgaatggacccaaaggcagc
ccaggagatcttggccaagaaggaccagcaggaatccctggcaatgctgggctgagagga
gcccctggcccaccaggacccccaggacagccaggacctgttggattccctggagctcgt
ggggcagcaggacctaaaggctttcatggatttccaggtttaagtggtctgaatggtttg
ccaggcacaaaaggctctcctggaacaccaggtctgagtgaagttgggctgaaaggacct
gcaggtctcccaggtaccaagggtgaagaaggctctccaggcttgggaagaggagctgca
ggattccctggaccaaagggctcagcaggagacatgggtccccctggtcctgtgggactg
cctggcctgccaggaacacctggagtttctcttccatctgatatacctgggagacctgga
gatgctggtgttccaggcaccgatgggagtccaggttttccgggtcttccagggccacga
gggccccctgggccagcttctgaccaaggtgacacaggcactccaggtttccctggtgtg
ctgggcctgcgaggcatcaagggtgacgtgggacccactggtgcagttggactccctgga
gcatctggattcaaaggtgcaagaggtgagcctggcctgatggggatgccagggaaagat
gggcctccaggggatcctggttatgctgggctgaagggtgaaatgggccctcgaggtctc
cctggcagaccaggggctccaggaataaccccacagccagaagaggtcacagcccctgca
ggattgcctggtctgccaggaattgatggtgttcctggctttgatggagatcctggattc
catggcccagctggaaaaccaggcccaaaaggtttgccaggaaggtctggtttgaaagga
cgtgatggcttccctggcactcctggcatagctggggatccaggaccttcaggtgcccca
ggaccacagggatttcaaggtgtggcggggctgccgggctcccctgggctgccgggaatg
ccgggccgcagcgtgggcgtcggatacacgctggtgaagcacagccagtcagagcagatc
cccccctgccctgtgggcatgagcaaactctgggatggatacagcctgctctacgtggag
gggcaggagaaggcacacaaccaggatctcggttttgctggctcgtgtttgcctcgcttc
agcaccatgcctttcatttactgcaacatcaatgaggtgtgctactatgccagccggaat
gacaagtcctactggctgtccaccactgcccccatccccatgatgcccgtggacagcctc
cagatcccccagtacatcagcaggtgctctgtgtgcgaagccccttcccaggctgtggct
gtgcacagccaggacatcaccatcccacagtgtcccctgggctggcgcagcctgtggata
ggatactccttcctcatgcacacggcggccggggcggagggcgggggacaatccctggtc
tcccccggttcctgcctggaggatttccgagccactcccttcatcgagtgcaacggcgcc
cgggggacgtgccactacttcgccaacaagtacagcttctggctgagcacggtggagcag
cagcagcagtttgtcagcgctcctccctccgagactctgaaggcggggcagctgcggacc
cgcgtcagccgctgccaggtgtgcatgaagaacctgtag

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