Sylvia atricapilla (blackcap): 136370472
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Entry
136370472 CDS
T10263
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136370472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136370472
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136370472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
136370472
NCBI-ProteinID:
XP_066190002
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All DBs
Position
21:1619152..1643721
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AA seq
564 aa
AA seq
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MATELEPPAAGAVAGAAPLEAEEDEEHWLYGDDTTAKQEDGPISGHTESAHPLQDTPQES
RPVNSEDRDMAQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRDRERERDRDRDRDRDRDRDRTPTTSEYNNDDERYRYYSRER
SYDFERDYRRSRDRSREREERHRERRHRDKDDSSKHKSSRRKQHESEEGESHRRHKHKKN
KRSKEEKEASEDGAQEGEEQDTKE
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggccgccggcgccgtggcgggcgcggcgccgctggag
gcggaggaggacgaggagcactggctgtacggggatgacaccacagctaagcaagaagat
ggaccaatttctggacacacggagtctgctcaccctctgcaggacactccccaggagagc
cggcccgtcaacagtgaggacagagacatggcccagcacgccctccccagcggcgaggac
gacgaggatgacagtgacagtgacagcgacgacgacgacgtgaaggtcacgattggcaac
atcaagactggagcgccgtcctacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatcagcttcagccaaattgcagcccaaaggtattgacttggatgct
gcagggaatataaatggattgcctgtgatagaagtggatttggattcatttgaagacaaa
ccatggaggaaaccaggtgctgatctttctgattactttaattatggattcaatgaagaa
acatggaaagcttattgtgaaaagcagcggcggcttcagctggggctggaccctgctcct
cccatcagcactgagaacaagatcacggttcagcagggaagaacaggaaatgctgaaaaa
gaagtggaaaacaacatcatcaaaacagagttcaaaacagacttcttggctctggtggga
ggacgaatgaaggctgggcctcctcccaacaggaagctgggtgggaccattgatgtcatc
gggggccaggcaggcaccatccgcagggtggaagggagacgtcgggacaaacacgcctcg
gaggaaaaccccattcaggtgctgggagaccacggcagtaagccccagcccccgcagcag
ccccagcagccctcccagccccagcagcctcctcagcagcagcccttcgctccaccagca
gggccgccgcctcccccgctggccgggcctcctcctccacacttcctgcaccctcctcct
cctgtgacttctgtgccacctcccctgcaccctccaggcctgccacctccaggtccaatt
ccagggttgttcccaccacctctggcaccaccaccagctctcctcatcccaaccttggat
gggcagccagccagctacaacaacaggcagccacctccctttggctacaactctgcagat
tcagggttcatcagctacccccccatctccacgtcccacacgccctgggtgaccacggtg
gacaagggcacgagcagctccagcagcagccactgggagtactcgggctcccggcgggac
agggagcgggagcgggacagggaccgcgaccgggaccgcgaccgggaccgcgaccgcacc
ccgaccaccagtgaatacaacaacgacgacgagcggtaccgctactacagccgcgagcgc
agctacgacttcgagcgcgattaccggcgcagccgcgaccgcagccgcgagcgcgaggag
cggcaccgcgagcgccgccaccgcgacaaggacgacagcagcaaacacaaatcctcccgc
aggaagcagcacgagagcgaggagggcgagagccaccggcgccacaagcacaaaaagaac
aagaggagcaaggaggagaaggaggccagcgaggacggggcccaggagggcgaggagcag
gacaccaaggagtga
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