Sylvia atricapilla (blackcap): 136370596
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Entry
136370596 CDS
T10263
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati04382
Cornified envelope formation
sati04510
Focal adhesion
sati04512
ECM-receptor interaction
sati04518
Integrin signaling
sati04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
136370596 (COL4A5)
04518 Integrin signaling
136370596 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
136370596 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
136370596 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
136370596 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sati04147
]
136370596 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
sati00536
]
136370596 (COL4A5)
Exosome [BR:
sati04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
136370596 (COL4A5)
Glycosaminoglycan binding proteins [BR:
sati00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136370596 (COL4A5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
136370596
NCBI-ProteinID:
XP_066190199
LinkDB
All DBs
Position
21:complement(7890451..7958683)
Genome browser
AA seq
1686 aa
AA seq
DB search
MERWSCSLAAGCLVLLLGCWGPQEAAAAACHGCTSLSKCDCSGVKGEKGERGFPGLEGQP
GLPGFPGPEGPPGPRGSKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGPQ
GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEPGEIITSLLPGQKGDPGFPGLP
GIPGPPGSVGIPGPVGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPG
PPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPPGPPGLPGGVKGEKGEQGEPGKRGK
PGKDGEPGQPGRDGLPGGPGINGAPGRDGEKGEKGDMGPPGPPGFVVPRPGIDATVGPKG
SKGLPGLPGAKGDRGFSGRPGPPGLPGSPGITTVGPPGPPGLPGERGQKGDPGLPGVSIP
GQPGAEGPQGPPGPPGPPGPPAPSVAPGEGLCEQGPPGPPGIPGQQGFTGERGQKGDRGD
TCFNCIGTGVTGPPGERGPPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGTPGAPG
RPGPKGDPGDVLASPRMKGDKGDPGLPGPPGLPGIDGTPGRDGLPGLPGPKGEPGSVAFK
GEMGIPGDPGIPGLPGEKGLPGPPGFGPQGLPGEKGIQGVSGRPGPPGVPGPKGEPGQTI
TEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLPGIPGAKGEPGIPGIGLPGPPGPKGFPG
TPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGLKGVQGPKGDPGF
PGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGSPGPPGPVGPPGLQ
GIPGEKGDPGPPGFDIPGPPGDQGAPGYPGPPGLPGPQGSPGPPGRDGIPGFPGAKGEMG
VMGAPGPPGPPGTPGRNGLPGLKGNSGLPGPPGPPGPVGQKGTKGEAGLPGPPGTLDPKH
LGAKGEKGEPGVPGIPGLSGQKGYQGLPGDPGPPGLSGPPGVPGLPGIKGDMGLPGQPGP
IGPPGLKGAMGEMGLPGPPGLKGSQGTAGRPGQPGPAGFPGLKGEKGDPGLSGIGIPGPP
GPKGDLGLPGYPGSPGPKGAAGNPGLPGFSGSPGAKGEPGLPGFPGTPGIPGPKGIEGPP
GNPGLPGPPGPVGDIGRPGPPGPSGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGPPGLPG
LSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGIPGPPLEGPKGSPGPPGV
PGRPGPPGPEGPRGPPGSGGLKGEKGNPGPPGPPGLTGPKGDQGPPGRQGDPGRPGLNGM
KGDPGVPGVPGFPGMKGPTGPAGPAGLTGSQGLPGPPGPPGLPGTIGRSIVVKGDPGSPG
PPGQPGSKGPPGLPGPQGLPGPIGLPGDPGRDGLPGFDGPAGRKGERGLPGQPGSRGIQG
PPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTSRIYDGFSLLYVQGNERAH
GQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPESMPMSMEPLTGQSIQP
FISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGAEGSGQALASPGS
CLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVAEMFSKPQSETLKAGDLRTRISRCQ
VCMKKT
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctggagctgcagcctggccgccggctgcctggtgctgctgctggggtgctgg
gggccgcaggaggcggcggcggcggcttgccatggatgtacatctttatccaaatgtgat
tgcagtggagtaaaaggtgaaaagggtgaaaggggattcccaggcttggaaggacagcca
ggtttgcctggatttccaggaccagaaggaccacctggtccaagaggctcaaagggtgac
gatggtcttccagggcctattggacccaaaggaatcagaggaccgccagggcttcccggg
tttccaggaacaccaggactccctggattgccaggacaagatgggccaccaggacctcag
ggtatcccaggatgcaatggaacaaagggagagcgtggattcccaggcagtccaggtttt
cctggtttacaagggcctcctggaccccctggtctgccaggtatgaagggtgaaccaggt
gaaataattacatccttgctgccaggacagaaaggtgacccaggatttccaggtcttcca
gggatacctggcccacctggctccgtgggaatcccaggtccagttggccctccagggccc
ccaggtctgacgggacctcctggtccaccagggctgccaggacccaagggtaatatgggt
ttgaatttccaaggacctaaaggtgaaaaaggtgaacaaggtcttcaggggcctccaggg
ccaccaggacagattggagaacagaaaagaccaaatgacattgagtttcagaaaggagat
cagggtattccaggtgatccaggcccaccaggacttcctgggccaccaggccctcctggt
cttcccggtggtgtaaaaggtgaaaaaggtgagcaaggagaaccaggcaaaagaggaaag
cctggcaaagatggagaacctggtcagcctggtagggatggtttacctggtgggccagga
ataaatggtgctccaggaagagatggagaaaagggtgaaaaaggtgacatgggtccccct
ggtcctcctggatttgtcgttccaagaccaggcattgatgcaacagtgggaccaaaaggt
agcaaaggattgccaggacttccaggagccaaaggggaccgtggattctctggtaggcca
ggcccacctggcctgccgggatctccagggatcactactgttggacctcctggcccacct
ggcttacctggggagagaggacagaaaggagacccaggtttacctggggtttctattcct
gggcaaccaggagctgagggaccacaaggaccaccaggaccaccgggtcccccagggcca
cctgcaccatctgttgctcctggtgaagggttatgtgagcaagggccaccaggccctcca
ggaattccaggacaacaaggttttacaggggagcgaggccaaaaaggtgaccggggagac
acttgcttcaactgcataggaactggagtgactggtcctcctggggagaggggcccacca
ggacctccgggtagtccaggttctcctggttttcctggaccaaaaggtgaaaaggggctt
cctggattaactggccttgtagggccaccaggcttcccaggcaccccaggtgctcctggc
agacctggtcctaaaggagacccaggggatgtcttggcttccccaagaatgaaaggtgac
aaaggagaccctggcctcccaggacccccaggtctccctggcatagatggcacccctgga
cgagatggactgccaggtttgcctggccctaagggggaacctggcagtgttgcattcaaa
ggagaaatgggtattccaggtgacccagggataccaggtcttcctggagaaaaaggactt
cctggacctcctggttttggtccacaaggcttacctggggaaaagggcatccaaggtgtc
tctggccgtccagggcctcctggtgttccaggtccgaaaggtgaacctggccagaccatt
acagaaccaggagttcctggtccccctggtcctccaggaagaaatggtgatccaggtctt
ccaggagatcctggtcagccaggccagcgtggtttacctggcatcccaggtgccaaggga
gagccaggaatccctggcattggacttccaggtcccccaggcccaaagggtttcccaggg
actccaggccctcccggagctccaggaactccaggtcgccctggtctggatggacctcct
ggaccacctggtttcccaggacagaagggagaccgtggatttggagttccaggaccacct
gggcccccaggacccccaggcttaaaaggagttcaaggacctaaaggtgatcctggcttc
ccaggaaaccctggtctcccaggcagggcaggctttgatggaaccccagggcccaaaggt
gaccctggaccaagtggaccaccaggacttccaggcccaccaggcatccctggcattggt
ggtcaaggtcctcctggatctccaggacctccaggtcctgttggccccccagggctgcaa
ggcattccaggggagaagggggatccaggtcctccaggcttcgacatccctggtcctcca
ggtgaccaaggagctccaggatatccaggaccccctggactcccagggcctcagggctca
cctgggccacctggcagggatggaatacctggatttccaggtgccaagggtgagatgggt
gtcatgggagctcctggtcctccaggacctccaggaacccctggaagaaatggcctgcct
ggcttgaaaggtaatagtggattacctggtccaccagggcctcctggaccagtggggcag
aaaggcaccaaaggtgaagcaggtctgccaggtccacctggaacacttgatcccaaacac
ctaggagcaaaaggagaaaaaggggagcctggagtgccaggtattcctggtttatctggc
cagaaaggttatcagggtctcccaggtgacccaggcccaccaggactcagtggccctcca
ggtgtgccaggattgccaggcatcaagggagacatggggcttcctgggcagccaggacca
ataggacctccagggttaaaaggagctatgggagagatgggccttccaggtccacctggg
ctcaaaggcagccaaggaacagcaggacgtccagggcagcctgggcctgcaggatttcct
ggactgaaaggggagaaaggtgaccctgggctttcaggcattggcattcctggtccccct
ggaccaaagggagatcttggcttgcctggatacccaggtagcccaggccctaaaggtgca
gctggaaatcctggtttgcctggattttcaggcagtccaggtgcaaaaggagaaccaggc
cttcctggattcccaggaactccaggaattccaggacccaaaggtattgagggccctcca
ggtaatcctggcctgcctggaccacctgggccagtaggtgacattggtcgtcctggccct
cctggtccttcaggggagaagggacaacctggtcgggatggaatccctggcccagcgggc
cagaagggtgaaccaggtctaccaggttttgggcgtccaggacctccaggactcccagga
ttgtcagggcagaaaggagagctgggcttacctggcccaccaggaccccctggacttcca
ggtctgaagggagaaccaggtttccagggattccctggtctgcagggtccaccgggccca
ccaggaataccagggccacctctggaaggtcctaaaggtagccctggcccaccaggtgtt
ccaggaaggccaggtcccccaggcccagaaggtccacgagggccaccaggcagtggagga
cttaaaggggaaaaagggaacccaggtccacctggtccacctggcctgactggtccaaag
ggagatcaaggaccacctggacgccagggggatcctggtcgtccaggtctgaatggaatg
aagggtgaccccggggttccaggcgttccaggattcccaggtatgaagggtcccactgga
cctgcaggacccgctggcctcacgggcagccagggactgccaggcccaccagggccacca
ggcttaccaggtaccatcggccggagcattgttgtcaaaggtgatcctggttcccctggt
cctccaggacagcctggctccaaagggccccctggactgccagggccacagggattgcca
ggtccaattgggcttcctggtgacccagggagagatggacttcctggctttgatggtcca
gcaggacgaaaaggagagagagggcttccaggccaaccaggatcacgcggcatacaagga
cctcctggtcctgatggcttacagggcccacctggtcctcctggaacagcttctgttgct
catggattccttataactcggcacagccagaccagggatacaccactgtgcccacaggga
acatcaagaatttatgatggattctctcttctgtacgtgcaaggaaatgagagagcacat
ggccaggatttgggtactgctgggagctgtcttagacgtttcagcaccatgcccttcatg
ttctgcaacatcaacaatgtctgtaactttgcctcaaggaatgactattcctactggctg
tcaaccccagagtcgatgcccatgagcatggagcccctgactgggcaaagcatccagccc
ttcatcagcaggtgtgttgtgtgtgaagctcctgccatggtgatagctgtgcacagtcag
accattcagatcccttcgtgtcctccaggctgggactccctctggattggttactccttc
atgatgcacacgagtgctggagcagagggctctgggcaggccctggcatctcctggatcc
tgtctggaggaattccgctcggcgccgttcatcgagtgccacggtcggggcacctgtaat
tattatgccaattcttacagtttctggctggcaactgtagaggtggcagaaatgttcagc
aaacctcagtcagagacactgaaagctggagacttgaggacgcggattagtcgctgtcaa
gtttgcatgaagaagacgtaa
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