KEGG   Sylvia atricapilla (blackcap): 136371554
Entry
136371554         CDS       T10263                                 
Symbol
KDM5B
Name
(RefSeq) lysine-specific demethylase 5B
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
sati  Sylvia atricapilla (blackcap)
Brite
KEGG Orthology (KO) [BR:sati00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sati01009]
    136371554 (KDM5B)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sati03036]
    136371554 (KDM5B)
Enzymes [BR:sati01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     136371554 (KDM5B)
Protein phosphatases and associated proteins [BR:sati01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     136371554 (KDM5B)
Chromosome and associated proteins [BR:sati03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    136371554 (KDM5B)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID JmjN zf-C5HC2 PHD_2 PHDvar_NSD zf-PHD-like CFAP410_C PHD_5 Lipoprotein_20
Other DBs
NCBI-GeneID: 136371554
NCBI-ProteinID: XP_066191788
LinkDB
Position
25:5585307..5641712
AA seq 1521 aa
MAEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLH
FTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLFQLNRLVAEQGG
FDVVCKERKWTKIATRMGFAPGKAVGSHIRAHYERILYPYNLFQSGASLLCLQKPDLSSD
TKDKEYKPHDIPQRQSVPPSESCPPARRAKRLTPEATNVKTETDPPEARTHNLRRRMGCA
PPKSESDKEMRSVVKLPEKKELSGDPEKDKSKVRSKKPTNAVDLYVCLLCGSGNDEDRLL
LCDGCDDSYHTFCLIPPLHDVPKGDWRCPQCLAQECNKPQEAFGFEQAARDYTLRTFGEM
ADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRGGKF
KVRPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWS
YSINYLHWGEPKTWYGAPGYAAEQLEDVMKKLAPELFESQPDLLHQLVTIMNPNTLMAHG
VPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLNRYC
VFSHDEMICKMASKADVLDVVVASTVQKDMAVMIEEEKRLREKVDKLGVTDSERVTFELF
PDDERQCLKCKTTCFMSAVYCPCKPGLLVCLYHIEDLCSCPSYKYKLGYRYTLEELYPMM
NALKMRAESYNEWASNVNEALEAKISNKKSLISFKALIEESEMKKFPDNDLLRHLRLVTQ
DADKCASVAQQLLNGKRQTRYRSGGGKCQNQLTVNELRLFVRQLYALPCVLSQTPLLKDL
LDRVEAFQQQSQKLLSEEMPRAAELQELLDVSFDFDVDLPQLPELRTRLEQARWLEDVQL
ACSEHSSLTLDDMRRLIDSGVGLAPYPAVEKAMAKLQELLTVSEHWDDKARNLIKARPRQ
SLSSLAAAVKELEEIPAYLPNGAALKDAVQKAKDWLQEVEALQAGGRVPVLDTLAELVTR
GRSIPVHLDYLPRLEALVAEVQAWKECAANTFLCENSPYSLLEVLCPWCDIGMLSLKRKQ
KKLKEAVPSGKKKSSKLETLSDLERALSESKDTASAMAALGEARLREMEALRALRAANEV
KVLSSEEDAELKVCLCQKEPAAPMIQCELCRGFFHTSCVPVPGAAPGPRVWLCPHCHRSE
KPPLEKILPLLASLQRIRVRLPEGDALRYMIERTVNWQHRAQQMLYSGNLKRIHDKIGSG
LLYSRWQALTGQLPETNKVSQTIGAMSFSMPHDWDNRTVYLHSPFSTGQHCIPLHVISTE
LDELMMEAQLLQVSLPEIQELYQALFTKQSPALQPEQRSPSTATSEKNECCRGKKDGISY
MERKLKRRFERESFCDEKRARVKKMRTPKKKKLKLNHSKDLCSNKLDRERERLLELQRSS
DSHLLPSDASFSEQEDSEDEDAICPAVNCLQPEGDEVDWVQCDGSCNQWFHQVCVGISPE
MAEKEDYICASCAGKDAQYRK
NT seq 4566 nt   +upstreamnt  +downstreamnt
atggccgagttcctgcccccgcccgagtgccccgtcttcgagcccagctgggaggagttc
gccgaccccttcgccttcatccacaagatccggcccatcgccgagcagaccggcatctgc
aaggtgcggccgccgccggactggcagcctccattcgcatgcgatgtcgacaagcttcac
ttcaccccgaggatccagaggctcaatgaactggaggcccaaactcgtgtaaagctgaat
tttctggaccagattgcgaagttttgggaacttcaaggatgcacactgaaaattccacac
gtggagaggaagatcttggatttatttcagcttaacagactagttgcagaacaaggagga
tttgatgttgtttgcaaggagagaaaatggaccaaaatagccacgaggatgggctttgct
cctggcaaagccgtgggctcacacatccgcgcgcattacgagcgaattctctacccctac
aacttgttccagtcaggagcaagtctcttgtgcttgcagaagccagatctgagcagtgac
acgaaggacaaggagtacaagccccacgacatcccgcagcggcagtcggtgccgccgtcg
gagagctgcccgcccgcccgccgcgccaagcgcctgacgcctgaggcaaccaatgttaaa
actgagactgaccctccagaagccagaactcacaatctgagacggagaatgggctgtgcc
cctccaaagagtgaaagtgacaaagaaatgcgcagtgtggtgaaactccctgagaagaaa
gaactttctggggacccagagaaggacaaatccaaagtcagatctaaaaaacccaccaat
gctgtggatttgtatgtgtgtctcctgtgtggcagtgggaatgatgaggaccgactcctg
ctgtgtgacggctgtgatgacagttaccacaccttctgtttaattccacccctccatgat
gttcccaaaggggactggaggtgtccccagtgtctggctcaggagtgtaacaagcctcaa
gaagcctttgggtttgaacaagcagcacgagactacactctccgcacgtttggggaaatg
gctgatgccttcaagtcagactattttaacatgccagtacacatggtccccactgagctg
gttgaaaaagaattttggagacttgtcagtaccattgaagaggatgtgacagtggaatat
ggagctgacattgcttcgaaggagtttggcagtggcttcccagttagaggtgggaagttt
aaagttagaccagaagaagaggaataccttgatagtggctggaatttaaacaacatgcct
gtgatggagcagtctgtgcttgctcacatcactgcggacatctgtgggatgaaattgccc
tggctgtacgtaggaatgtgcttttcctcattttgttggcatatagaagaccactggagc
tattccattaactatctgcattggggggagcctaaaacgtggtatggagccccagggtac
gcagctgagcagctggaggatgtaatgaagaaacttgctccagagctatttgagtcccag
ccagatctcttgcaccaacttgtcaccataatgaacccgaacactttgatggcccacggg
gtgccagtgtacagaaccaaccagtgtgctggggagtttgtgatcacctttcccagagct
taccacagcggcttcaaccagggcttcaacttcgctgaagctgtgaacttctgcactgtg
gactggctgcccctgggccggcagtgcgtggagcattaccggctgctcaaccgctactgc
gtcttctcccacgatgagatgatctgtaaaatggcttccaaagcagatgtcctggacgtt
gtggtggcatctacagtccagaaagacatggctgttatgattgaggaggagaagaggttg
cgtgagaaggttgataaactgggagtgactgactcagagagggtgacgtttgagctgttc
cctgatgatgagcgacaatgcttaaagtgtaaaaccacctgcttcatgtcagcagtttat
tgtccctgcaaacctgggttgttggtgtgcttgtaccacattgaggacctttgctcctgt
ccctcctacaaatacaagctggggtaccgctacaccctggaggagctgtacccgatgatg
aacgcgctcaagatgcgcgccgagtcctacaacgagtgggcttccaacgtcaacgaggcc
ctggaggcaaagatcagcaacaaaaaaagtctcatcagttttaaggctttgatagaagaa
tcagaaatgaaaaagttcccagacaatgacctgctgcgacacctccggctggtgacacag
gacgcagacaaatgtgcctcagtggcccagcagctgttgaatggcaagagacagaccagg
taccgctccgggggaggcaagtgtcagaaccagctgacggtgaatgagctgcggctcttc
gtgaggcagctctatgccctgccctgtgtcctcagccagacaccgctgctgaaggatctc
cttgaccgtgtggaagctttccaacagcaaagccaaaagctcctttctgaagagatgccc
cgtgctgcagagctgcaggagctgctggacgtcagctttgactttgacgtggacctgccg
cagctgccggagctgcggacgcgcctggagcaggcgcgctggctggaggacgtgcagctg
gcctgctccgagcacagctccctcaccctggatgacatgaggcgcctcatagactcgggc
gtggggctggcgccctacccggccgttgagaaggcgatggccaagctgcaggagctcctc
accgtgtccgagcactgggatgacaaagccaggaacctgatcaaggccaggccccggcag
tccctgagcagcctggcagcagcagtgaaggaactggaggagatcccagcctacctccca
aatggagcagcactgaaggatgcagtgcagaaggccaaggactggctgcaggaggtggag
gcactgcaggctggaggccgtgtgccagtgctggacacgctggcagagcttgtcaccaga
ggtcggtccatcccagtgcacctggattacctgcccaggctggaggccctggtggccgaa
gtgcaggcgtggaaggagtgtgcagcaaacacgttcctgtgcgagaactctccgtattcc
cttctggaggtgttgtgcccctggtgtgacatcgggatgctcagtctgaagaggaagcag
aagaagctgaaggaggcagtgccaagtggcaagaagaagagcagtaagctggagacactg
agtgacctggagcgggcactctctgaaagcaaggacactgcgtctgcgatggccgcgctg
ggagaggcccggctgagggagatggaggcactgcgtgccctgcgagcagcgaacgaggtg
aaggtgctgtcgagcgaggaggacgccgagctcaaggtgtgtctgtgccagaaggagcca
gctgctcccatgatccagtgtgagctctgcaggggcttcttccacaccagctgcgtgccg
gtgcccggcgctgcgccggggccgcgcgtgtggctgtgcccgcactgtcaccgctccgag
aagccgcccctggagaagatcctgccgctgctggcgtctctgcagcgcatccgcgtgcgg
ctgcccgagggcgacgccctgcgctacatgatcgagagaactgtgaactggcagcacaga
gcacaacaaatgttgtattcagggaatctaaaacgcatccacgacaagattggctcagga
ttactgtacagcaggtggcaagccttgacgggccagctgccagagacaaacaaggtgtca
cagacaattggagcaatgtcattctccatgcctcatgactgggataacagaaccgtgtat
ttgcattctccattctctacaggacagcactgcatcccacttcatgtcattagcactgag
ctggatgagctgatgatggaagcccagctgctgcaggtttctttgcccgagatccaggag
ctgtaccaggccctgttcacgaagcagagcccagccctgcagccagagcagaggtcaccc
agcacagccacaagtgagaagaatgagtgttgccgagggaaaaaagatgggattagttac
atggagagaaaactgaagcggcgttttgagagggagagcttctgtgatgagaagagagcg
agagtaaaaaagatgagaacacccaaaaagaagaaactgaaactgaatcactcaaaggat
ctgtgcagtaacaaactggacagagagcgggagcggctcctggagctgcagcgttccagc
gacagccacttgctgccctcagacgcgtcattctctgagcaggaggactctgaggatgag
gatgccatctgcccagctgtgaactgcctccagcccgagggggatgaggtggactgggtc
cagtgtgacggcagctgcaaccagtggttccaccaggtgtgtgtgggcatctccccggag
atggccgagaaggaggattacatctgtgccagctgcgccgggaaggacgcccagtacagg
aagtaa

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