Sylvia atricapilla (blackcap): 136372072
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Entry
136372072 CDS
T10263
Symbol
DHX58
Name
(RefSeq) ATP-dependent RNA helicase DHX58 isoform X1
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
136372072 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sati04054
]
136372072 (DHX58)
Enzymes [BR:
sati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136372072 (DHX58)
Pattern recognition receptors [BR:
sati04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
136372072 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
Helicase_C
ResIII
DEAD
AlaDh_PNT_C
AAA_11
DUF5740
Motif
Other DBs
NCBI-GeneID:
136372072
NCBI-ProteinID:
XP_066192632
LinkDB
All DBs
Position
27:complement(1804699..1809157)
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AA seq
723 aa
AA seq
DB search
MRRLQFRFWPLSAAAAAGRGAAGDGAAGVPAGGGGSGPARPQLHRLAAHGRREDTRGRPR
LPAAPGEPAGRQSGRACQQGAALPQDRGSHGWWSWPVLSVVLRAQVHLVDQHAEKEFHAL
QDAFKVTSISGDTSHKTFFADLVKRSDVVICTAQILQNALVSTEEDMRVELTDFSLLVID
ECHHTHKDAVYNKIMLRYLQCKLSGQRDLPQVLGLTASPGTGGATSFEGAVEHILQICAN
LDSEKITSVQDEAQHLQSHVPQPKKQYDLCQERVQDPFGEQLKKIMMQIHKFMQKPALSQ
DLGTQIYEQRIVELEKRAAEMFCRKTRVCALHLRKYNDALLINDSVRMVDAFQCLQQFYS
AERDKKDSTEQFLTATFEENRLSLQALAGDHRYENPRLSKLERLLREHFQPLGTSRGIIF
TSTRQSAYSLLSWLQTTATLSGQHIRAAVLTGAGYSNQTRHMTQNEQQDVIKQFREGALN
LLFSTSVAEEGLDIPECNIVVRYGLMTNEIAMMQARGRARAENSVYSVLAKANSREVTRE
LLNEDLVKLMKRAIEAVQAMPEQEYCQKIQELQRVAVASWLMKEARISERQQLHAPDAVS
LYCVNCHTAVCRGSDIRTVEGMHHVNIDPKFGSYYRVSSGKMHFQRAFKDWEPGCRISCK
ACSQDWGMEMLYRQVKLPILCIKNFVVETPAEKRRYKKWSAVTFPIKAFDYLEYCSDTCG
LSL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcctccagtttcgtttctggccgctctcggctgcggcggctgcgggacgcgga
gcggcgggggatggagctgcgggggtaccagcgggaggcggcggctccggccctgcgcgg
ccgcaactgcatcgtttggctgcccacgggcgccgggaagacacgcgtggccgtccacgt
ctgccggcggcacctggagagccggcggggcggcaaagtggccgtgcttgtcaacaaggt
gctgccctgccccaggaccgcgggagccacgggtggtggtcctggccggtgctgagtgtg
gtcctgcgggcacaggtgcacctggtggaccagcacgctgagaaggagttccacgcgctg
caggacgcctttaaagtgacgtccatcagtggggacaccagccacaaaaccttcttcgcc
gacctggtgaagaggagcgacgttgtcatctgcacagcccagattctgcagaacgccctg
gtcagcacggaggaggacatgcgcgtggagctgacagatttctcgctgctggtgatagac
gagtgccaccacacacacaaggacgccgtctacaacaagatcatgctgagataccttcag
tgcaagctcagtgggcagcgggacctgccacaggtcctggggctgacggcatcccctggc
actgggggggcaacatcctttgagggggccgtagaacacatcctacagatctgtgccaac
ctggactctgagaagatcacatcggtgcaggatgaggcacagcacctgcagagccatgtc
ccccagccgaagaagcagtatgacctgtgccaggagagagtgcaggacccctttggtgag
cagctgaagaagatcatgatgcagatccacaagttcatgcagaagccagctctctcacag
gacttgggcacgcagatttacgagcagcgcattgtggagctggagaagagagctgcggag
atgttttgtcgcaagacacgggtgtgtgccctgcacctgcgcaagtacaacgacgctttg
ctgatcaacgacagcgtgcggatggtcgacgccttccagtgcctccagcagttctacagc
gctgagagggataagaaggactccaccgaacagttcctcactgccacatttgaggagaac
agactgagcctgcaggcacttgccggggaccaccgctatgagaaccccaggctgagcaag
ctggagaggctcctgcgtgagcactttcagcccctgggcacttctcgtggcatcatcttt
accagcacaaggcagagtgcctacagcctgctcagctggctgcagaccacggccacactc
agcgggcaacacatcagggccgctgtcctcactggtgctggctacagcaaccagaccagg
cacatgacacagaatgagcagcaggatgtgatcaagcagttccgtgagggagccctcaac
ctgctcttctccaccagtgtggccgaggagggcctggacatccccgagtgcaacatcgtg
gtccgctatgggctgatgaccaatgagattgccatgatgcaggcccggggccgtgcccgt
gctgagaacagcgtctactctgtccttgccaaagccaacagcagagaggtgacccgagag
ctgctcaatgaggacctggtgaagctcatgaagagggcgattgaggcagtgcaagccatg
cctgagcaggagtactgccagaagatccaggagctgcagcgggtggccgtggccagctgg
ctgatgaaggaggccaggatcagcgagaggcagcagctgcacgccccggacgctgtcagc
ctgtactgtgtcaactgccacacggccgtgtgccgcggcagcgacatccgcacggtggag
ggcatgcaccacgtcaacatcgaccccaaatttgggtcgtattacagagtttcctctggg
aaaatgcatttccagcgggctttcaaggactgggagcctggctgccgtatctcctgcaaa
gcctgcagccaggactggggcatggagatgctgtaccggcaggtgaagctgcctatcctc
tgcatcaaaaactttgtggtggagacaccagcagagaagaggaggtacaagaagtggagc
gctgtgacattccccatcaaagcgtttgactacctggagtactgctctgacacctgcggc
ctgtccctctag
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