Sylvia atricapilla (blackcap): 136372243
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Entry
136372243 CDS
T10263
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03040
Spliceosome
Brite
Enzymes [BR:
sati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136372243 (DHX8)
Spliceosome [BR:
sati03041
]
Complex C
Other components
Step II factors
136372243 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
PhoH
TsaE
Cas3-like_C_2
ABC_tran
Sigma54_activ_2
Transformer
Motif
Other DBs
NCBI-GeneID:
136372243
NCBI-ProteinID:
XP_066192861
LinkDB
All DBs
Position
27:2188828..2202805
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AA seq
1192 aa
AA seq
DB search
MAELAAAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNTTFDTFKAILQK
NGAEFTDSLISNLLRLIQTMRPPPKASTSKETIVKPKSEKEKLRELYPALCRPDNPNVRN
MLDEDDVKVAADALKELEALMPSADKQSKERSSDHRAKKRKRSRSRSRDRKRRHRSRSRS
RSRTWDRNRGKSRYRSRSRSWSPSKDRKDREKYLEKSHDRWRDKHIDRPPAEEPSIGDIY
NGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG
SKTSLSMKDVDQDTGEDLNPNRRRNLVGESNEETSMRNPDRPSHLSLVSAPEVEDDSLER
KRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPF
LRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNTH
WVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIF
RLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAK
RVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAH
ERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILY
TKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELI
ILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSK
TGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLAST
VLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPM
LCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAV
YNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAIC
SGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTI
DPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctggcggcggccgaggagctcgccaagctcgagtacttatcgctggtgtcc
aaggtctgcaccgagctcgacaaccacctgggcatcaacgacaaggacctggctgagttt
gtgataagtcttgccgagaaaaataccacgtttgacacatttaaagcgattcttcagaag
aatggtgctgagttcactgattccctcattagtaacttgctccgtctcatccagacaatg
cggcctccaccaaaagcatccacgagcaaagagacaattgtcaaacctaaatcagagaag
gagaagttgagggaattgtatccagccctttgcaggccagataatcccaacgtcaggaat
atgctggatgaagatgatgtgaaagtggcagctgatgccctgaaagaactcgaagctctg
atgcctagtgcagacaagcagagcaaggagaggagcagcgaccatcgggccaagaaaagg
aagaggagccgaagccgtagccgggacaggaagcgaaggcacagatctcgctccaggtct
cgttccaggacttgggataggaacagaggaaaatccagataccgctcaaggagcaggagt
tggagtcccagtaaggaccgcaaggatcgggagaagtacctggagaagagccatgacagg
tggagagacaagcacatagaccgtcccccagctgaggagccttccatcggggacatctac
aacggcaaagtcaccagcatcatgcagtttgggtgctttgtgcagctggaaggactaagg
aaacgttgggaaggcttggtccacatctcagagctgcgaagagaaggacgggttgccaat
gttgctgatgttgtgagcaaaggacaaagagtgaaagtcaaagtgttgtcttttactgga
tccaaaactagcctgagcatgaaggatgttgatcaagacactggggaagacttgaaccca
aaccgtaggaggaacctggttggagaaagcaatgaagaaacgtccatgaggaacccagac
agacccagtcacctgtccctggtgagcgcccccgaggtggaggacgacagcctggagcgg
aaacgcctcacgcgcatttcggaccccgagaagtgggagataaaacagatgattgcagct
aatgtgctttccaaggaagagtttcctgactttgatgaagagactgggattcttcctaaa
gttgatgatgaagaagatgaggatcttgagattgagctagttgaagaagagccaccattt
cttcgaggtcacactaaacagagcatggatatgagccccattaaaatagtaaagaatcca
gatggttccttgtcccaggctgccatgatgcaaagtgctttagctaaagagaggagagaa
cttaaacaagcccagagagaagcagagatggattccatccccatgggcctcaacacacac
tgggtggatcctctccctgatgtggatggaagacaaatagctgccaacatgcgaggtatt
gggatgatgccaaatgatatcccagagtggaagaaacacgcctttggtggcaacaaagct
tcttatggtaagaagacacagctttccatcattgaacagagagagagtctcccaatcttc
agactgaaggagcagctaatacaagctgtgcatgacaaccagattctgattgttattgga
gagacaggatctgggaaaacaacccagattacccaatacctggctgaggcaggatatacc
tcaagagggaagattggatgtactcagcctcgcagagtggctgcaatgtctgttgcaaag
agggtgtcagaggaatttggttgctgcttgggacaagaggttggctacaccattcgtttt
gaagactgcaccagccctgagactgtcatcaaatacatgacagatggcatgttactgaga
gagtgcctgatagacccagatctgacccagtatgccatcatcatgctggatgaggcccat
gagaggaccatacatacagatgtgctctttgggctcctgaagaagacagtgcagaaacgg
caggacatgaagctcatagtgacgtcagccacactggatgctgtgaagttctcccagtat
ttctatgaagcaccaatcttcacaattcctggcagaacgtacccagtagaaattctgtac
acaaaagagccagagacagattatttggatgccagtctgattacagtaatgcagatccat
ttaacagagcctccaggtgacattttggtctttctaactggccaggaagagattgacact
gcctgtgaaatcctctacgagaggatgaagtctctgggacctgatgttccagagttaatt
atcctaccagtatattcagctttgcccagtgaaatgcagaccaggatctttgacccagcc
ccaccagggagcagaaaggttgtcattgccaccaacattgcagagacctctttgactatt
gatggaatatattatgtggttgatcctggctttgtgaagcagaaggtttataactccaag
actggaattgaccagctggtggtaacacccatttcccaggctcaagccaagcagcgtgca
ggaagggctgggagaacaggcccaggaaaatgctacaggctgtacacagaacgtgcatat
agggatgagatgctaaccaccaatgtgcctgaaatccagagaacaaatttggccagtaca
gtgctctccctgaaggctatgggcatcaatgatttgctgtcctttgactttatggatgct
ccccccatggaaactctcataactgccatggagcagctctacaccctgggagctctggat
gatgagggactgctcactcgacttgggcgcaggatggcagaattccccttggagcctatg
ctgtgtaagatgctgatcatgtctgtgcacctgggctgcagcgaggagatgttgacaatt
gtctccatgctgtctgtgcagaatgtgttctacaggccaaaggataaacaagcccttgct
gatcaaaagaaagccaagttccatcaaacagaaggtgaccacctcacgctgctggctgtg
tacaattcctggaagaataataaattttcaaatccctggtgctacgaaaattttatccag
gcccgatccttacgccgggctcaggacattcgcaagcagatgttgggcatcatggacagg
cacaagctggatgtggtgtcctgtgggaaggcaacagttcgggtccagaaggccatttgc
agcggcttcttccgaaatgcagcaaagaaggatccccaggagggctatcggacactcatt
gaccagcaggttgtttatatccacccatccagtgctctcttcaacaggcagcctgaatgg
gtggtgtatcacgaactggtgctgaccaccaaggagtacatgcgggaggtgacgaccatc
gaccctcgctggctggtggagtttgccccagctttcttcaaggtctctgaccccaccaag
ctgagcaagcagaagaagcagcagcggctggagccgctctacaaccgctacgaggagccc
aacgcctggaggatttcccgcgccttccggcgccgatga
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