Sylvia atricapilla (blackcap): 136373334
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Entry
136373334 CDS
T10263
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
136373334 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sati01009
]
136373334 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sati04515
]
136373334 (PCDH20)
Protein phosphatases and associated proteins [BR:
sati01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
136373334 (PCDH20)
Cell adhesion molecules [BR:
sati04515
]
Cadherins
Protocadherins
136373334 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
136373334
NCBI-ProteinID:
XP_066194338
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All DBs
Position
2:complement(59451337..59455593)
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AA seq
934 aa
AA seq
DB search
MQHSLLEVAVGGGGGGRQWVGEVPALPHTPVFLSSQHLLLFLLFVGPFNCFASYSRATEL
FYSLNEGLPAGVLIGSLAHDLRLPTAGGQNPESLQPPLSFTLASHGLGGQYVQLDNRSGE
LHTSAVEIDREALCVESSGATIFGGSAAVSSSSASPESCLLLLDVLILPQEYFRLVKVKI
AIRDVNDNAPRFPVPHIRLLVPENAPVNTRLAIEHPALDPDMGTNGVQTYRLRDNYGVFT
LDVEENENGERTPYLIVMGALDRETQDEYVTVIIAEDGGTPPLVGSATLTVGISDINDNC
PQFNDSQLNVTLYGNSSLGTHVATVHAVDMDLGSNAQITYSYSQKVPQPSRDLFHLNEST
GAITLSSKVDGDTPRLHRLIILANGPGCIPAVITVLVTIIKVMMRPPEVVPRFIANEVEG
VVYLKELEPINTPVAFFTIKDPDEKYKVSCYLDGDGPFRLSPYKPYNNEYLLETTKPLDF
ETQQLYEISVVAWNSEGFHVKKVVKIQILDDNDNSPVFSEQLIELSIEENNVPNAFLTKL
HATDADSGERGQVSYFLGPDAPSYFALDKTTGVLTVSTQLDREEKEKYRYTVKAVDSGFP
PRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVISVTDADAGQNGWVALS
VLNGSDIFVIDTGKGVLRAKVSLDREQQSSYILWIEAVDGGDPALSSTAKITILLLDIND
NPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRI
DPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLL
RKEPDISVEEKQPQISIEPTHKRMESASCMPTLVALSIISLGSIALVTGMGIYICLRKGK
KHHRADENLEVQIPLNGRINLHMLEKKPVEISNI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgcagcactcgctgctcgaagtggctgtggggggaggtggtggggggaggcagtgggtg
ggggaggtgccagcccttcctcacacccctgtgtttctttcttctcagcacttgctcctc
ttcctgctcttcgttgggcctttcaactgctttgccagttacagccgcgccactgagctc
ttctacagcctcaacgaggggctgcctgctggggtgctcatcggcagcctggcccatgac
ctgcggctcccaacggctggtggccagaaccctgagtctctgcagcccccactctccttc
accctggcctcccatggcttggggggacagtatgtgcagctggacaaccgctctggggag
ctgcacacctcagctgtggagatagaccgggaagctctatgcgtggaaagcagtggagcc
accatcttcgggggatcagctgctgtctcctcttcctccgcctcaccagagtcatgccta
ctgctgctggatgtgctgatactgccacaggagtactttcgcctggtgaaggtaaaaatt
gctatccgtgatgtcaatgacaatgcaccccgcttccctgtgccccacatccgtctcttg
gtgcctgagaatgcacctgtgaacacccgcttggccatcgagcaccctgcccttgaccct
gacatgggcaccaatggcgttcagacctaccgcctgcgagataactatggtgtcttcacc
ctggatgtggaggagaatgagaacggtgagaggactccctacctgattgttatgggggcg
ctggacagggagacacaggacgagtatgtcacagtcatcatcgctgaggatggggggact
cctccgctcgtgggcagcgccaccctcactgttggcatcagtgacatcaatgacaactgc
ccccagttcaacgactcccagctcaacgtcaccctttatgggaattccagcctagggaca
cacgtggctactgtccatgcagtggacatggaccttggatccaatgcccagatcacctac
tcctacagccagaaggtgccccagccatccagagacttgttccatctgaatgaaagcaca
ggagccatcacactctccagtaaagttgatggggacactccaaggctacacaggctgatc
atactggccaatggtcctggctgtattcctgccgtgatcacagtgctagtgaccatcatc
aaagtcatgatgaggccacctgaagttgttcctcgtttcatagctaacgaagtggaaggg
gtggtctacttaaaggagctcgagcctatcaacacacctgtagcattttttaccatcaaa
gacccggacgaaaaatacaaagtcagttgctatttggatggcgatgggcctttcagactt
tcaccatacaagccatacaacaatgaatatctgttggagaccacgaagcctttggacttt
gagacacagcaactgtatgaaatctccgtagttgcatggaactccgaaggatttcatgtc
aagaaagttgtcaaaatacagattctggatgacaatgacaattcaccagttttctctgaa
caactgatagaattgtccattgaggagaacaatgttccgaatgcttttttgaccaaactg
catgctactgatgctgacagcggagaaagagggcaagtgtcctattttttaggtcctgat
gccccttcctattttgctttagataaaaccacaggagttcttacagtttccacccaactg
gacagagaagaaaaagagaaatacagatacactgtcaaagcagtagattctggattccct
ccaagagaatcaatagcaactgtcaccatcactgtattggataaaaatgataacagtcca
agatttatcaataaggatttcagcttttttgtgccagaaaactttccaggttttggtgaa
attggagttataagtgtcacagatgctgatgcagggcaaaatggatgggttgccctttca
gttctgaatggaagtgatatttttgttatagatactgggaaaggagttttgagagctaaa
gtctccctggacagggagcagcaaagctcctacattctgtggattgaagcagttgatggc
ggtgatcctgccctgtcttctacagcaaaaataactatccttcttctggacataaatgac
aaccctcctttagtcttgtttcctcagtctaatatgtcttacttgttagtccttccttct
acccttcctggctctcccatcaccgaggtctatgctgtcgataaggacaccggcatgaat
gcagtcatagcttacagtatcataggaagaagaggccctcgacccgagtcatttaggatt
gaccccaaaactggaaatatcaccttggaagagtcactgatgcaaaatgactatggcctc
tatcggctgcttgtaaaagttagtgaccacggctacccagaacctctccattccactgtc
atggtgaacctctttgtcaatgataccgtcagcaatgagagctacattgaaagtttgttg
aggaaggagcctgatatcagtgtagaagaaaagcagccacaaatatccatagagcctaca
cataaaagaatggagtcagcatcctgcatgcctaccttggtagctctttcaataataagc
ttgggttcaattgctttagtaacagggatgggaatttacatttgtctaagaaaagggaaa
aagcatcacagagcagatgaaaacttggaagtacaaatcccattaaatggaagaattaac
ctgcacatgttggagaagaaaccggtggagatttctaacatttga
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