Sylvia atricapilla (blackcap): 136373956
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Entry
136373956 CDS
T10263
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03018
RNA degradation
Brite
Enzymes [BR:
sati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136373956 (MTREX)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
136373956 (MTREX)
Spliceosome [BR:
sati03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136373956 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
136373956 (MTREX)
Ribosome biogenesis [BR:
sati03009
]
Eukaryotic type
Pre-60S particles
Helicases
136373956 (MTREX)
Transfer RNA biogenesis [BR:
sati03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
136373956 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136373956
NCBI-ProteinID:
XP_066195135
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All DBs
Position
Z:75700302..75741283
Genome browser
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKNKTGPAEAAKRPGKRSEEKPSVTAIVKPKREIEI
DSTENVILGKKPKLEDVLSEDVNLTDLMPQVKVQSVETVEGCTHEVALPAHEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVSAISSIRLYIPKDLRPIDNRQSVLKSVLEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLENIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgtttgaggaggatgcggccgccgct
gcttctggcgccaagaagaacaaaacgggccccgctgaggctgccaagaggccggggaaa
cgatcggaagaaaaaccttcagtaacagcaatagtcaagcctaaaagggaaattgagatt
gatagtactgaaaatgttattttaggaaaaaagccgaagttagaagatgtgttatcagaa
gatgttaatctgacagatctgatgcctcaagtaaaggtgcagtctgtggaaactgttgaa
ggctgtacacatgaggttgcgcttccagcacatgaagaattcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagctatt
ctttgtgtagataataatcagtctgtgttagtgtcagctcacacatcagctggtaaaact
gtctgtgctgagtatgcaattgccctggctttgagggaaaagcagcgtgtgatatttaca
agtccgattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatccaacagcttcttgtttggtaatgaca
actgagatcttgaggagtatgctttacagaggttctgaggttatgcgtgaagtcgcatgg
gttatttttgatgaaattcactacatgagagatacagaacgcggtgtggtttgggaagag
actattattttgcttcctgataatgtgcattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
actgactatcgacccactccactgcagcattatatatttccagcaggaggagatggacta
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggatcagaaaggcaggaagggaggaaca
aaaggtccttcaaatgtttttaagatagtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcctcttctg
aagcgaggaattggtattcatcatggtggtttgcttcctatcttgaaagaaaccatagaa
atccttttctcagagggcctgataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatgggaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgagaaaatgagcccaacaattggc
aagcagcttttgaagggttcagctgatcccttaaacagtgcgttccacctgacatacaac
atggtactgaacttacttcgagtagaggaaattaaccctgaatatatgttagaaaaatca
ttttatcagttccagcattacagaactattccagaaatagtggaaagagtcaataacttg
gaagcacagtacaacaaaattgtcattcccaatgaagaaaatgtggtaatatactacaga
atccgccagcagcttgcaaagctgggtaaagatattgaagagtatattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tacggatggggtgtggttgttaatttctcgaagaaatcaaatgttaagccaaattccggt
gaattggacccattgtatgtagttgaagtgctcctgcactgcagcaaagacagtttgaaa
aattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcaggtt
gttcctgttctggtgcatctcgtctcagctatcagcagtatccgactctacatcccgaaa
gacctgaggcctattgataacagacaaagtgtgttaaaatctgtactggaagtacagaaa
cggtttcctgatggagtacccttactggaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaattcaaaaaatagaggcatttgagcataggatgtattcacatcct
cttcacaatgatccaaacttagaaaacatatacaaactttgtgaaaaaaaagcgcagatt
gctatggacattaaagtagcaaagcgagaattgaagaaagccagaactgtcctgcaaatg
gacgagctcaaatgccgcaagcgtgttctgagaagattggggtttgccacatcttcagat
gtgattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactacttctt
acagaaatgatgttcaatggtcttttcaatgacttgactgcagaacaagcaactgcactt
ctcagctgttttgtgtttcaagagaactccagtgaaatgccaaaattgactgaacagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtctcagcagaa
gcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtg
tttgaaggtagcataattcgttgcatgaggcgtctagaagaactgcttcggcagatgtgc
caggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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