Sylvia atricapilla (blackcap): 136374362
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Entry
136374362 CDS
T10263
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
sati Sylvia atricapilla (blackcap)
Brite
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Meiosis-specific proteins
Others
136374362 (SHOC1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136374362
NCBI-ProteinID:
XP_066195782
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Position
Z:complement(50410888..50456593)
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AA seq
1464 aa
AA seq
DB search
MLKKSQNKMFTALKYHSTDYLYESTARQKFSIWKLSLCFPPCLHQDEKYHLTGLFADDKY
RKPWTRIGSTQNMIAISVLDQWKKSLLVEDFLEKKPFSSVEFQASNDLIEVIPSSNPYSQ
TNTEEHFLLTENGFKEDSTQDKYLKIYYATEFKEPQEDLCLEEELVFIYNLETFHKKLPA
LSILLSRLQFFLVKDPLLDSDGQILTAENIFRECLTFQNGMKIEVSQNELQGIEESFCTV
SIKDEEYFLLPIELEFSKPNNSRSDCVKIPSYLQVKEVLNLAPVTVDDEGLCKQVIREDL
KAEITYKIEISKYCAIPQEVCSSISTSMLEFCESAEYISYLKDEMEVPLTPPCRQQRSWV
NFPCGGLQEEPISLSGNSILIAEPSREFLESLVWHSEKYRDNMSSLLLVENPAVNLAHQH
HSLTELQKKLPVEIEAPVLGSQEEDCWLHRGINPAAVEILEQLNVDGSNANSLLPTEAET
FTRFTSNQLERWLEEKNSVTNQELLSAERHQPEKVVNPDLSLQIQRQYFAIRTVSSAKIH
ITNTSVEGLSGRSLRKIRTEEANCFLNQGKKTSKPSESDSCKDVSSKLDKSSYSGKPASL
AVASRWANDDSDLNNFIMMRSKHTLSQREEKKNVDRPEKVVQPEEPHMHVPKEDDSFHET
VKTEEKIQKNEDSITISVQPSESQCQAYCLLEEAAIPVLKELTHLGVLASVTWSFDSVKF
DHTRFFLKQQEKVICDNFKQGKIDEKEIMLFRHAALVHLLVTIRDLLLTCDLDTALGYLS
KAKDIYKNILESCLNNIWRQLKIVQYSSQKKHETHPKITALQCEMLNWMKSYGEKHSVKI
LIITRMDSEREKDAFIHPLSRIEAGLKTVYLNYEKKGSPLSCKEIISNLCRYSCIIVHNQ
QIGADFPWTHFSLVMEYDYSENSGWKNLCKNLNVTYMTFKTTLSETIQVGNHGSSFLLEV
QIPYVFLTTEGLLNMPDILQLFESKYSITFVERSSSYSLRLFGSIDRYVVLTIDACTAVL
MQSMEELNHEDSCDTIISRLMALSLQYMCCWIIFYSRERLSLEYSLKGNTLLNLVLIYAT
LIELTQKSEDFEVKVILTPGIEETALVIRQIADNILVSSNISPHEWLDKSWLSVLPSETE
KCLLAFPCINPLVAQLMLKKRSSLNSLFLASFFQLQELLPEIPKKVLKHFSDMVSSYSLN
TAAPLAKTVKDASQPEKQNNFNTLCLDNKENNDILDLLNKTQNSAGTSPLNSEPLIPPPI
LLKGVLKSDLPSSMQKKACSSDVITRRKPDFFAVSNDYEDFAHQKVKNSLHVQRQPLKMH
DRSDHASKDFEKEDFFATLSNCVPQESSRSFLEEFRDTAFKTPEIQIGQPLWNDSSSTDP
HTSFAQDSFLSDFFDGRDELQNMNFNQIGGASKGKRKQRPPFLWTKEKIKTDSGFPEAQE
FKKRRLTYERVPGRRDGQTRLKFF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaaagtcacaaaacaagatgtttacagctttgaagtatcactcaactgactat
ttatatgagagcacggcaaggcagaagttttccatctggaaattatcactttgctttcct
ccttgtttacatcaagatgaaaagtatcatctcactggactctttgctgatgacaagtat
aggaagccatggactagaattggttcaacacagaacatgattgctatatcagtattggat
caatggaagaaaagtttacttgttgaggatttcctggaaaagaaacctttctcctctgta
gagtttcaggctagtaatgatttaatagaagttattccaagttcaaatccttactctcag
actaacacagaagaacattttttacttacggagaatggttttaaggaagactccacccaa
gacaaatatttgaagatttactatgccactgaatttaaagaaccacaggaagatttatgt
ttggaagaagagttggtttttatctataatcttgaaacttttcataaaaaattgccagct
ttatctatacttctgagcagactacaattttttttagtgaaagatccccttttagattca
gacggacagattttgacagcagaaaatattttcagagaatgtttgactttccaaaatgga
atgaagatagaagtgagtcaaaatgaattgcaggggattgaagagagtttctgtactgta
tctataaaagatgaagagtatttcctgttgcctattgagttagaattcagcaaacccaac
aacagcagatctgattgtgttaagattccatcatacttgcaagtaaaggaggtgttaaat
ttagctccagtcactgtagatgatgaaggcctttgcaaacaagtgatcagagaagatctc
aaagcagaaattacatacaaaatagaaatttccaagtactgtgccattccacaagaggtt
tgctccagtattagcacaagtatgttggaattctgtgagtcagctgaatatatttcgtat
ttgaaagatgaaatggaagtgcctttaactcctccatgcagacaacaaagatcatgggtt
aattttccatgcggaggacttcaagaagaacctatttctctctcgggtaacagtattttg
attgcagagccctctagggaattcttagaatctttggtatggcactcagagaagtatcgg
gataatatgagctctcttttgcttgtcgagaatccagctgttaaccttgcacatcagcat
cattcactgacagaactgcagaaaaagctgccagttgagatcgaagcaccagtgcttggc
tcacaagaggaggactgctggcttcataggggtataaatccagcagctgtagaaattttg
gagcagttgaatgtggatggaagtaatgcaaacagtttgcttcctacagaagcagagaca
ttcacacgatttacatcaaatcaattagaaagatggcttgaagagaagaattctgtgaca
aaccaggagcttctttctgctgaaagacatcagccagaaaaagttgttaatcctgacttg
tcactgcagattcaaaggcagtactttgccatacgtactgtgtcatctgccaaaattcac
attacaaatacatctgtggaagggcttagtggaagaagcctaagaaagattaggacagaa
gaggcaaattgtttcttaaaccaaggaaagaaaacctccaaaccatctgaatcagacagc
tgtaaagatgtgtcttctaaactagacaagtcatcctatagtggaaagcctgcatcactt
gcagttgcttctagatgggctaacgatgattctgatctgaacaactttattatgatgaga
tctaaacatacactaagccaaagagaggaaaaaaaaaatgtagatagacctgaaaaagtc
gtacagcctgaagagccgcatatgcatgttcccaaagaggatgattcttttcatgagact
gtgaaaacagaggaaaaaatccaaaagaatgaagacagtatcaccatcagtgttcagcca
tcagaaagccaatgccaggcatactgcctcttggaagaagcagccattcctgtactaaaa
gaattgacacatctgggtgtacttgcttctgtcacttggagctttgacagtgttaaattt
gatcatacaaggtttttcttaaaacagcaagagaaagtgatatgtgataattttaaacaa
ggtaaaatagatgagaaggagatcatgctgttcagacacgctgctctggtacacctgctg
gtgacaattcgagatctgctactaacatgtgacttggatacagctctaggttatttgtcc
aaggcaaaggatatctataaaaatattttagaatcctgtttgaataacatctggaggcag
ttgaagattgtacagtacagcagccaaaaaaagcatgaaacacatcccaaaataacagca
cttcagtgtgaaatgttaaattggatgaaaagttacggagagaaacacagtgttaagata
ctaatcattacaaggatggactctgaaagagaaaaggatgccttcattcaccccttatct
aggatagaagcaggtttgaaaactgtgtatttgaattatgagaaaaaaggaagcccttta
agttgtaaagagatcataagcaatctgtgtagatattcctgcattattgtacataatcag
caaattggagctgatttcccttggacacacttctcattagtaatggaatatgattattct
gaaaattctggctggaaaaatctgtgcaaaaatctgaatgttacttacatgacttttaaa
accaccctctctgaaacaatacaagtggggaatcatggtagttcctttcttctggaagta
cagattccatatgtatttctgacaactgaaggtcttcttaatatgccagatattcttcag
ctttttgaatccaagtacagcattacctttgttgaaagaagcagcagttactccttaagg
ctctttggaagtatagatcgatacgttgtgttgacaatagatgcatgtactgctgtctta
atgcagagtatggaagaactaaatcatgaggactcctgtgacactataatatcgaggctg
atggcattatcactccaatacatgtgctgttggattattttctattccagagaaagactg
agtttagaatacagtctcaagggaaatactctgcttaaccttgtcttaatttatgccact
ctaattgaacttacacagaagtcagaagactttgaagtgaaggtaattcttacaccaggg
attgaagagacagcactggtaattcgtcagattgctgacaacattttggtatcatctaat
atcagtcctcatgagtggctggacaaatcctggctttctgtcttgccatctgagacagag
aaatgcctgcttgcttttccatgtatcaatcctttggttgctcagttaatgttaaagaag
agatcttcactgaacagtttatttcttgcaagcttttttcaactccaggaacttctgcca
gagattccaaaaaaagttttaaagcatttcagtgacatggtatcttcatacagtctaaat
actgctgctcctctagcaaaaactgtgaaagatgcatcacagccagaaaaacagaataac
ttcaacacactgtgtcttgataataaagaaaataatgacattttagacctgcttaataag
acacaaaacagcgcaggaacatctcctttgaattctgaacccctaattcctccaccgatt
cttcttaagggtgttttaaagtctgatcttccaagtagtatgcaaaagaaagcgtgctcg
tcagatgtaatcacaaggaggaagcctgacttctttgctgtatcaaatgactatgaagat
tttgctcatcaaaaagttaaaaattctctccatgttcaaagacagcctttgaagatgcat
gataggtctgatcatgcttccaaagactttgaaaaagaggatttctttgcaactttaagt
aactgtgtacctcaggagagctctaggagttttctagaagaatttagagacacagcattt
aaaaccccagaaattcagattggccagcccctgtggaatgattcttcatcaacagaccca
catacttcatttgctcaagatagttttctctctgacttctttgatggtagggatgagctt
caaaatatgaattttaaccaaataggtggagcatctaaaggaaagagaaaacaaaggcct
ccattcttatggacaaaagaaaaaattaaaacagattcaggatttccagaagcacaggag
ttcaaaaaaaggagattaacatatgaaagagtccctggaagaagagatggacaaacacgt
cttaaattcttttga
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