Sylvia atricapilla (blackcap): 136375170
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Entry
136375170 CDS
T10263
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03013
Nucleocytoplasmic transport
sati03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136375170 (UPF1)
03015 mRNA surveillance pathway
136375170 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sati03019
]
136375170 (UPF1)
Enzymes [BR:
sati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136375170 (UPF1)
5.6.2.5 RNA 5'-3' helicase
136375170 (UPF1)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136375170 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
136375170 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
136375170
NCBI-ProteinID:
XP_066196632
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAAAQG
PSGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGSSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcaaaccctcaccttcctggacaccgaggag
gccgagctgctgggcgcagacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccaaaccccgcccgggccgggccaggcggggccggcggccgcccaaggg
ccctccggagcggggcagggagctccgggcccgctggaagcgcaggtgaatggtcctgat
ggcatcctgcagaacggagcagtggatgagaacgtggccaaaaccagccagctcctggca
gagctcaactttgaggaggatgaggaggacacttactacaccaaggatctccctgtgcac
gcctgcagttactgtgggatccatgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtggcaacacctctggcagccacatcgtgaatcacctggtg
agagccaagtgcaaagaggtgactctgcacaaggatgggcccctgggggagactgtcctg
gagtgttacaactgtggctgcaggaacgtcttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctctgcaggcagccctgtgccagccagagcagcctcaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgtttcctctcctgg
ctggtgaagatcccctcggagcaggagcagctccgggccaggcagatcacagcccagcaa
atcaacaaactggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggaaccccagcacgtgctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcagggagatgag
atctgcctgaggtacaagggagacctggcccctctctggaaaggaattgggcatgtgatc
aaagttcctgatagttctacagattatggtgatgagattgccatcgagctgaggagcagc
gtgggagctcctgtggaggtcactcacaacttccaggtggattttgtgtggaaatccacg
tcctttgacaggatgcagagtgccctgaaaacatttgcagtggacgagacctcggtgtct
ggctacatttaccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgtttcacagcccagggcctccctgatctcaaccactctcaggtttatgct
gtcaagacagtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaag
acagtgacatcggccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagtaacatcgccgtggatcagctgacggagaagatccaccagactggc
ctcaaggtggttcgtctgtgtgccaagagccgtgaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctg
aagcgcacggcggagagggagctgctgatgaacgccgatgtgatctgctgcacgtgtgtg
ggggcaggtgacccgcgcctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggcaaagcagctgatc
ctggtgggcgaccactgccagctgggccccgtggtgatgtgcaagaaggcggccaaggcg
gggctgtcgcagtcgctgttcgagcggctggtggtgctgggcatccggcccatccgcctg
caggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgag
ggctccctgcagaacggcgtcacggcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtcacccagggccaggaggagattgcc
agctcaggcacctcttacctgaacaggactgaagctgccaacgtggagaagatcaccacc
aagctgctcaaggctggggccaaacctgaccagattgggatcatcaccccctacgagggg
cagcgctcctacctggtgcagtacatgcagttcagtggctccctgcacaccaaactctac
caggaagtggaaattgccagtgtggacgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtgagggccaacgagcaccagggaattggtttcctcaacgaccccaggagg
ctcaacgtggccctgaccagagccaggtacggggtgatcattgtgggcaaccccaaggcg
ctgtccaagcagccgctctggaaccacctcctgaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgagggagagcctgatgcagttcagcaaaccccgaaag
cttgtcaacaccatcaaccccggtgctcgtttcatgaccactgccatgtatgatgcacga
gaggccatcatccctggctctgtctacgaccgcagcagccaagggcgtccatccaacatg
tacttccagacccacgaccagattgggatgatcagtgctggccccagccacgtcactgcc
atgaacattcccatccccttcaacctcgtcatgccccccatgcctcccccgggctacttt
ggccaagccaacggccctgctgcaggtcgtggggctcccaaagggaagactggccgtgga
gggaggcagaaaaacagatttgggattcctggcagcagccagtccaacctccccaacagc
caggccagccaggacgtggtgtcccagcccttctcccagggccccctgacccagggctac
atctccatgagccagccctcccagatgagtcagcctgggctctcccagccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgagcatatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
